helper_component_protein

Euk-Vir

Tomato_necrotic_stunt_virus

helper_component_protein__YP_006280732__Tomato_necrotic_stunt_virus__1176153

Identity

86.9 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Tomato_necrotic_stunt_virus

TaxID: 1176153

View cluster (80 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-104

PDB

Domain cluster: rep: HC-Pro__YP_009252411__Tobacco_mosqueado_virus__1792583__D31-64_66-104

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	46.3	4.40e-12	100.0%	18.2%

D2 medium residues 112-171

PDB

Domain cluster: rep: HC-Pro_protein__YP_006405405__Basella_rugose_mosaic_virus__373398__D110-165

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	48.9	6.80e-13	100.0%	13.2%

D3 medium residues 212-222_274-456

PDB

Domain cluster: rep: HC-Pro_protein__YP_006590094__Chinese_yam_necrotic_mosaic_virus__128818__D95-261

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	283.2	5.80e-84	99.5%	41.6%

D4 medium residues 223-273

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00851.25 best	Peptidase_C6	30.4	2.80e-07	100.0%	12.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8e9gD01	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.60	49.0	2.97e-01	100.0%	52.7%
1pp0B00	3.40.198.10	Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like	0.55	42.0	2.89e-01	86.3%	70.1%
1lnwF01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	39.0	3.11e-01	84.3%	50.8%
4fymF00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	38.0	2.70e-01	88.2%	85.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4434849	247.1.1.24 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2	0.58	44.0	2.82e-01	88.2%	63.9%
4261739	3068.2.1.1 ↗	a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C	0.58	40.0	3.27e-01	76.5%	46.4%
3183030	101.1.2.519 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7791	0.56	43.0	3.01e-01	92.2%	80.5%
5017330	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	42.0	3.33e-01	94.1%	55.2%
4959431	101.1.2.150 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_45	0.54	39.0	3.39e-01	86.3%	96.8%
4988311	2003.1.5.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C	0.53	39.0	2.54e-01	88.2%	67.5%
5009797	101.1.2.141 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_24	0.53	36.0	2.85e-01	72.5%	69.2%
4951644	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	34.0	2.96e-01	70.6%	97.9%
None	—		0.51	41.0	2.52e-01	98.0%	29.5%