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hemagglutinin

Euk-Vir

Avian_paraavulavirus_3

hemagglutinin__YP_009094216__Avian_paraavulavirus_3__2560327

Identity

Accession:
YP_009094216 ↗
Protein ID:
hemagglutinin
Kingdom:
euk

Quality

77.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Paraavulavirus› Paraavulavirus_wisconsinense

TaxID: 2560327

Cluster

View cluster (61 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 139-184_475-577
PDB
Domain cluster: rep: attachment_glycoprotein__YP_009094338__Salem_virus__120499__D206-222_471-620
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 89.9 2.00e-25 68.5% 17.6%
PF00423.27 HN 36.3 3.40e-09 32.2% 7.1%
D2 medium residues 185-290
PDB
Domain cluster: rep: hemagglutinin-neuraminidase__YP_009094497__Tuhoko_virus_1__798072__D178-291
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 140.9 7.20e-41 100.0% 19.5%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.97 90.0 5.67e-01 100.0% 23.0%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.96 93.0 5.85e-01 100.0% 23.8%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.93 89.0 5.68e-01 100.0% 25.5%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.81 76.0 4.97e-01 100.0% 26.5%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.81 76.0 4.94e-01 100.0% 27.4%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.74 68.0 4.61e-01 100.0% 32.8%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.72 64.0 4.26e-01 100.0% 25.6%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 56.0 3.65e-01 100.0% 51.2%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 39.0 4.23e-01 96.2% 72.8%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 55.0 3.80e-01 100.0% 57.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.61 34.0 4.39e-01 88.7% 96.6%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 39.0 4.14e-01 96.2% 73.9%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 54.0 3.92e-01 100.0% 35.0%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 35.0 4.23e-01 93.4% 96.8%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 52.0 3.83e-01 100.0% 35.8%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 54.0 3.69e-01 100.0% 41.4%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 52.0 3.66e-01 100.0% 49.6%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 52.0 3.85e-01 100.0% 39.7%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 32.0 3.73e-01 93.4% 76.6%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 50.0 3.63e-01 100.0% 47.1%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.36e-01 100.0% 35.6%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.54e-01 100.0% 51.8%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 37.0 3.37e-01 100.0% 49.7%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 35.0 3.21e-01 100.0% 47.9%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 37.0 3.65e-01 70.8% 94.8%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.53e-01 71.7% 62.3%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 38.0 3.61e-01 71.7% 90.2%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.30e-01 74.5% 61.3%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 45.0 3.31e-01 99.1% 96.2%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.50 38.0 3.33e-01 81.1% 71.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
152420 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.96 93.0 5.73e-01 100.0% 21.8%
1563144 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.96 92.0 5.69e-01 100.0% 21.5%
4889672 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.93 89.0 5.64e-01 100.0% 25.1%
2541822 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.92 88.0 7.04e-01 100.0% 56.9%
1112626 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.91 87.0 5.52e-01 100.0% 24.9%
3062082 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.90 86.0 5.49e-01 100.0% 25.2%
3062081 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.86 80.0 5.18e-01 100.0% 24.7%
4881991 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.85 80.0 5.14e-01 100.0% 37.0%
2527935 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.85 79.0 5.13e-01 100.0% 24.7%
1519176 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.81 75.0 4.92e-01 100.0% 26.4%
2093820 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.79 74.0 4.77e-01 100.0% 25.1%
5032693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 64.0 4.24e-01 100.0% 23.5%
3017638 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.75 70.0 4.45e-01 100.0% 23.3%
3627380 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 52.0 3.65e-01 100.0% 24.0%
4011973 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 53.0 3.67e-01 100.0% 24.6%
5042256 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 40.0 4.17e-01 70.8% 63.6%
4569359 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 38.0 4.25e-01 95.3% 70.6%
3825307 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 53.0 3.16e-01 100.0% 11.4%
3648057 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 58.0 4.06e-01 100.0% 40.9%
5040713 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.65 60.0 3.83e-01 100.0% 35.0%
3827703 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.65 55.0 3.92e-01 100.0% 31.3%
3713323 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.64 59.0 4.55e-01 100.0% 58.7%
3781730 5.1.11.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.63 57.0 3.91e-01 100.0% 35.7%
4030216 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 58.0 4.09e-01 100.0% 53.3%
5031161 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.63 38.0 3.29e-01 71.7% 38.7%
3707549 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.63 56.0 3.78e-01 100.0% 33.5%
3505993 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 57.0 3.96e-01 100.0% 35.9%
4026848 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.63 50.0 3.64e-01 100.0% 30.2%
3303486 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.62 40.0 4.00e-01 94.3% 62.7%
3294086 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 56.0 3.78e-01 100.0% 45.3%
3483569 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 55.0 3.62e-01 100.0% 42.5%
3824503 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.60 54.0 3.98e-01 100.0% 37.9%
4088510 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.59 42.0 3.14e-01 74.5% 65.2%
3630840 5.1.3.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Phytase 0.58 52.0 3.60e-01 100.0% 38.9%
3458037 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.56 41.0 3.51e-01 76.4% 81.1%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.56 38.0 4.20e-01 95.3% 88.2%
3725667 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 47.0 4.51e-01 99.1% 100.0%
3465790 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 42.0 3.29e-01 95.3% 41.9%
3958189 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 35.0 3.32e-01 98.1% 59.2%
3287136 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 46.0 4.33e-01 100.0% 100.0%
3962355 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 36.0 2.90e-01 94.3% 38.0%
3277859 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 46.0 4.30e-01 100.0% 100.0%
D3 medium residues 291-474
PDB
Domain cluster: rep: hemagglutinin-neuraminidase_protein__YP_009508497__Avian_paramyxovirus_14__1928005__D254-485
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 158.3 3.80e-46 100.0% 30.3%