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hemagglutinin_protein

Euk-Vir

Measles_morbillivirus

hemagglutinin_protein__NP_056923__Measles_morbillivirus__11234

Identity

Accession:
NP_056923 ↗
Protein ID:
hemagglutinin_protein
Kingdom:
euk

Quality

69.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Morbillivirus› Measles_morbillivirus

TaxID: 11234

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 130-184
PDB
D2 medium residues 185-237_500-617
PDB
Domain cluster: rep: attachment_glycoprotein__YP_009094338__Salem_virus__120499__D206-222_471-620
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 57.5 1.30e-15 71.4% 18.2%
D3 medium residues 289-339
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.78 43.0 3.73e-01 76.5% 36.5%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 52.0 3.28e-01 100.0% 15.5%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.28e-01 94.1% 72.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 46.0 3.67e-01 100.0% 37.2%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.62 50.0 4.31e-01 92.2% 68.2%
2ds4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 48.0 3.93e-01 90.2% 69.5%
4umgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 3.97e-01 90.2% 67.6%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 40.0 3.49e-01 88.2% 45.9%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.60 44.0 3.56e-01 100.0% 38.5%
3lsoA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 3.78e-01 84.3% 63.0%
3v8oA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 3.87e-01 88.2% 60.8%
2fpnA02 3.30.360.40 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like 0.60 49.0 4.50e-01 98.0% 70.8%
5erdB05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 47.0 3.98e-01 92.2% 66.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 51.0 3.83e-01 100.0% 75.2%
2yqgA00 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 48.0 3.68e-01 92.2% 52.8%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 50.0 4.39e-01 100.0% 83.1%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 3.97e-01 94.1% 70.0%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.59 51.0 3.11e-01 98.0% 88.5%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.18e-01 92.2% 76.6%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 50.0 3.32e-01 100.0% 80.4%
3iayA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 46.0 3.09e-01 92.2% 46.9%
7cymA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 45.0 3.89e-01 92.2% 71.3%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.96e-01 92.2% 68.2%
3rghA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.79e-01 92.2% 67.7%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 49.0 3.67e-01 100.0% 84.8%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.57 48.0 3.69e-01 98.0% 58.9%
5iryA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 45.0 3.84e-01 94.1% 72.3%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 3.45e-01 92.2% 37.1%
2dmcA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.12e-01 94.1% 81.1%
1qfhA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.66e-01 92.2% 58.4%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 48.0 3.53e-01 100.0% 65.7%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.83e-01 98.0% 71.7%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.55 39.0 2.96e-01 78.4% 70.5%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.39e-01 92.2% 38.9%
4a2lB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.39e-01 92.2% 76.4%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 45.0 3.52e-01 94.1% 50.9%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.83e-01 100.0% 15.7%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 44.0 3.39e-01 100.0% 81.6%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 3.54e-01 100.0% 49.6%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 42.0 3.31e-01 90.2% 44.3%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 46.0 3.10e-01 98.0% 39.7%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.28e-01 90.2% 43.0%
3c65A00 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.53 43.0 3.14e-01 96.1% 31.1%
7uwjC02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.52 41.0 3.44e-01 92.2% 68.0%
2ra1A05 2.60.40.2120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.77e-01 98.0% 74.4%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.19e-01 90.2% 63.0%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 43.0 3.19e-01 100.0% 44.8%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.01e-01 96.1% 34.4%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.19e-01 90.2% 41.7%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.78e-01 94.1% 65.8%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.25e-01 92.2% 47.4%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.12e-01 92.2% 38.6%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 39.0 3.07e-01 92.2% 36.6%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.23e-01 92.2% 46.6%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.29e-01 92.2% 43.0%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 41.0 3.43e-01 92.2% 66.3%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.93e-01 96.1% 85.8%
1l3wA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 38.0 3.17e-01 92.2% 58.8%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.16e-01 90.2% 48.3%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.69e-01 98.0% 73.4%
3v9fA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.23e-01 94.1% 47.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628233 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 48.0 4.29e-01 92.2% 54.3%
3924550 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.64 56.0 3.97e-01 100.0% 36.1%
3678895 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 44.0 3.34e-01 76.5% 36.0%
3952011 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.62 51.0 3.23e-01 100.0% 17.2%
3487749 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 3.99e-01 94.1% 75.5%
3225640 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.61 51.0 3.82e-01 94.1% 38.4%
3424784 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.60 52.0 4.04e-01 100.0% 51.3%
3715079 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.59 47.0 3.77e-01 88.2% 45.1%
3578826 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.53e-01 92.2% 95.4%
3273166 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.74e-01 100.0% 13.3%
3503123 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.59 46.0 3.48e-01 92.2% 36.7%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 53.0 3.84e-01 100.0% 94.1%
5050431 283.2.1.8 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.58 50.0 3.99e-01 100.0% 59.0%
5024351 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 41.0 2.85e-01 76.5% 25.2%
3675847 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 50.0 3.10e-01 100.0% 20.5%
3583426 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 3.52e-01 96.1% 35.7%
6289 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.45e-01 92.2% 37.1%
3257736 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.59e-01 92.2% 58.2%
4818740 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.56 46.0 4.19e-01 92.2% 85.5%
5018499 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 46.0 3.93e-01 94.1% 61.2%
4942397 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.50e-01 92.2% 54.8%
3494110 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 47.0 2.72e-01 100.0% 23.0%
3481288 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 43.0 3.38e-01 92.2% 39.1%
3518476 11.1.1.647 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GAE_BBS1 0.55 43.0 3.46e-01 90.2% 63.6%
3579802 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.86e-01 94.1% 70.6%
3575081 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.98e-01 92.2% 84.3%
3508065 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.55 42.0 3.55e-01 90.2% 55.0%
3255471 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.02e-01 94.1% 66.7%
4444614 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 45.0 3.92e-01 94.1% 62.5%
3453917 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 44.0 3.28e-01 98.0% 49.0%
4939116 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.27e-01 92.2% 66.7%
3995396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.56e-01 92.2% 67.8%
3513396 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 41.0 2.94e-01 92.2% 26.7%
5012406 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 42.0 3.35e-01 94.1% 77.9%
3725650 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.52 44.0 3.38e-01 100.0% 47.7%
3272923 1169.1.1.0 ↗ a+b complex topology › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 0.52 43.0 3.18e-01 94.1% 52.1%
None — 0.52 42.0 2.63e-01 100.0% 17.1%
3497948 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 3.55e-01 94.1% 60.0%
3544631 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.52 40.0 3.85e-01 90.2% 83.3%
3254982 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.51 43.0 3.87e-01 90.2% 71.4%
5039143 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.51 42.0 3.19e-01 92.2% 40.8%
5049920 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.51 42.0 3.07e-01 100.0% 33.8%
4940079 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.63e-01 92.2% 81.3%
D4 medium residues 340-499
PDB
Domain cluster: rep: hemagglutinin-neuraminidase_protein__YP_009508497__Avian_paramyxovirus_14__1928005__D254-485
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00423.27 best HN 111.5 5.60e-32 100.0% 29.2%