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hexon,_partial
Euk-VirPsittacine_adenovirus_1
hexon,_partial__YP_010087287__Psittacine_adenovirus_1__318592
Identity
- Accession:
- YP_010087287 ↗
- Protein ID:
- hexon,_partial
- Kingdom:
- euk
Quality
69.6
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Psittacine_adenovirus_1
TaxID: 318592
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-170_261-306
Domain cluster:
rep: hexon__YP_007347006__Bovine_adenovirus_6__111167__D128-260_364-409
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01065.25 best | Adeno_hexon | 78.8 | 5.10e-22 | 75.5% | 22.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 23.0 | 3.42e-01 | 99.0% | 97.4% |
D2
high
residues 314-372
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01065.25 best | Adeno_hexon | 60.5 | 1.70e-16 | 100.0% | 9.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p2zA02 | 3.90.39.10 | Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 2 › Hexon Major Viral Coat Protein, domain 2 | 0.81 | 72.0 | 5.24e-01 | 100.0% | 37.5% |
| 1x58A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 31.0 | 3.40e-01 | 100.0% | 54.2% |
| 4pcwC00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 36.0 | 3.14e-01 | 89.8% | 42.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4889924 | 10.2.1.90 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Adeno_hexon, Adeno_hexon_C | 0.82 | 72.0 | 4.04e-01 | 100.0% | 9.0% |
| 163336 | 10.2.1.17 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Adeno_hexon | 0.82 | 74.0 | 4.17e-01 | 100.0% | 10.0% |
| 4017134 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 38.0 | 2.94e-01 | 98.3% | 25.9% |
| 3559955 | 2007.15.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK | 0.62 | 31.0 | 2.18e-01 | 91.5% | 13.2% |
| 3600666 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.53 | 44.0 | 3.18e-01 | 100.0% | 52.3% |
| 4930554 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 34.0 | 3.46e-01 | 98.3% | 66.7% |
| 4883897 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.52 | 42.0 | 2.85e-01 | 93.2% | 73.0% |
| 4032209 | 3758.1.1.4 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TelA | 0.51 | 37.0 | 2.76e-01 | 79.7% | 29.7% |
D3
medium
residues 172-260