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hexon

Euk-Vir

Human_mastadenovirus_D

hexon__YP_001974453__Human_mastadenovirus_D__130310

Identity

Accession:
YP_001974453 ↗
Protein ID:
hexon
Kingdom:
euk

Quality

62.6 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Human_mastadenovirus_D

TaxID: 130310

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-296_412-452
PDB
Domain cluster: rep: hexon__YP_009362848__Bat_mastadenovirus_WIV17__1986505__D115-307_370-416_787-818
D2 high residues 638-719_889-911
PDB
D3 medium residues 63-104_316-329_562-576
PDB
Domain cluster: rep: hexon_protein__YP_009373247__Deer_mastadenovirus_B__2170000__D64-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01065.25 best Adeno_hexon 55.1 7.50e-15 62.0% 7.3%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.70 39.0 2.94e-01 97.2% 24.2%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 34.0 3.32e-01 94.4% 42.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 38.0 3.33e-01 100.0% 36.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 38.0 3.20e-01 100.0% 33.3%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.65 38.0 4.35e-01 97.2% 82.0%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.39e-01 100.0% 38.5%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 4.38e-01 100.0% 68.4%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 53.0 4.49e-01 95.8% 63.6%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.33e-01 100.0% 35.2%
4nehA05 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.61 51.0 3.92e-01 95.8% 69.1%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.51e-01 100.0% 40.6%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.24e-01 100.0% 34.2%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.37e-01 98.6% 38.3%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 52.0 4.36e-01 98.6% 72.6%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 36.0 3.72e-01 100.0% 63.2%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 35.0 2.32e-01 97.2% 14.4%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 36.0 2.81e-01 100.0% 28.1%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 52.0 4.41e-01 98.6% 60.5%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 2.89e-01 97.2% 28.0%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.47e-01 98.6% 69.0%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 45.0 4.74e-01 97.2% 98.4%
3ub0A02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.57 49.0 4.56e-01 97.2% 90.2%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.34e-01 98.6% 63.6%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.05e-01 95.8% 57.6%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 47.0 4.35e-01 97.2% 82.1%
4aeeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.77e-01 95.8% 58.8%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.88e-01 95.8% 61.4%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 2.91e-01 100.0% 32.5%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 4.54e-01 100.0% 89.7%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.54 44.0 3.63e-01 91.5% 68.9%
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 4.40e-01 97.2% 90.4%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.95e-01 98.6% 77.0%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.88e-01 98.6% 54.6%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.71e-01 95.8% 64.8%
5zceA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 45.0 4.44e-01 98.6% 90.9%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.53 42.0 3.27e-01 93.0% 61.9%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.53 44.0 3.48e-01 97.2% 90.9%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 44.0 4.32e-01 97.2% 88.3%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.83e-01 95.8% 66.7%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 2.42e-01 80.3% 43.5%
3qwnA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.51 45.0 3.65e-01 98.6% 53.0%
3k6oA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.51 44.0 3.54e-01 97.2% 50.7%
1je6A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.75e-01 93.0% 71.9%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.50 30.0 3.03e-01 98.6% 59.4%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 43.0 4.21e-01 100.0% 91.1%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 42.0 4.11e-01 97.2% 93.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3902712 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.68 60.0 4.31e-01 100.0% 56.1%
4926998 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 59.0 4.96e-01 100.0% 71.7%
4977976 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 52.0 4.45e-01 95.8% 53.9%
3997433 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.65 37.0 2.48e-01 97.2% 14.7%
5041899 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 57.0 4.78e-01 100.0% 67.5%
5080180 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 5.11e-01 95.8% 85.3%
5025924 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 55.0 4.68e-01 100.0% 95.8%
4992376 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 5.30e-01 95.8% 96.0%
3257397 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 4.54e-01 100.0% 71.2%
3958686 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.62 44.0 3.10e-01 100.0% 24.1%
4937622 11.1.1.1423 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7407 0.61 45.0 3.90e-01 98.6% 50.0%
5016736 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.54e-01 100.0% 64.8%
5053995 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 53.0 5.27e-01 98.6% 97.3%
5007161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 4.44e-01 98.6% 64.0%
3264983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 4.08e-01 95.8% 61.1%
5054044 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.66e-01 98.6% 75.3%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 54.0 4.74e-01 100.0% 71.2%
5055242 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 53.0 5.10e-01 100.0% 95.0%
3914722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 53.0 5.26e-01 100.0% 98.7%
3970564 11.1.1.1362 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3426 0.60 52.0 4.69e-01 98.6% 83.0%
5000734 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.62e-01 98.6% 84.0%
3287846 222.1.1.5 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.59 52.0 4.08e-01 100.0% 60.6%
3287683 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.28e-01 98.6% 61.0%
4997739 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.29e-01 95.8% 62.9%
4522938 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.59 51.0 4.27e-01 95.8% 95.8%
4015453 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.56 47.0 3.91e-01 95.8% 77.7%
4397160 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 49.0 4.11e-01 100.0% 64.0%
3608810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.37e-01 95.8% 82.2%
1981 12.1.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C 0.55 46.0 4.54e-01 97.2% 89.9%
3723416 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.55 47.0 3.83e-01 98.6% 80.4%
3812322 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 3.45e-01 95.8% 58.7%
3253742 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.27e-01 98.6% 77.6%
4937355 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.94e-01 100.0% 71.5%
3187444 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.54 46.0 4.02e-01 98.6% 75.7%
3265459 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 45.0 3.86e-01 94.4% 94.8%
3592063 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.41e-01 98.6% 98.8%
4944124 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.26e-01 98.6% 77.7%
3179184 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 33.0 3.09e-01 95.8% 51.1%
5038083 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 38.0 3.23e-01 77.5% 100.0%
3389361 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 4.01e-01 100.0% 70.5%
4948927 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 34.0 2.54e-01 98.6% 23.3%
1164375 3233.1.1.1 ↗ beta sandwiches › Ig-like domain in putative lipoprotein BF3042-related proteins › Ig-like domain in putative lipoprotein BF3042-related proteins › Ig-like domain in putative lipoprotein BF3042-related proteins › NigD_C 0.51 45.0 3.65e-01 98.6% 53.4%
3742691 12.1.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C 0.51 42.0 4.16e-01 97.2% 91.9%
5083094 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 41.0 2.87e-01 91.5% 62.8%
3220519 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.50 41.0 3.19e-01 95.8% 40.0%
D4 medium residues 297-315_389-411_459-493
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01065.25 best Adeno_hexon 32.2 6.20e-08 50.6% 6.1%