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hexon_assembly_protein_100K
Euk-VirHuman_mastadenovirus_F
hexon_assembly_protein_100K__NP_040865__Human_mastadenovirus_F__130309
Identity
- Accession:
- NP_040865 ↗
- Protein ID:
- hexon_assembly_protein_100K
- Kingdom:
- euk
Quality
72.5
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Human_mastadenovirus_F
TaxID: 130309
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-126
D2
medium
residues 137-155_488-521
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 34.6 | 9.20e-09 | 66.0% | 5.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a1kA01 | 1.10.20.60 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain | 0.54 | 38.0 | 3.80e-01 | 73.6% | 83.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020981 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.75 | 36.0 | 2.38e-01 | 79.2% | 12.6% |
| 4025108 | 3100.1.1.1 ↗ | extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin › Synaptobrevin | 0.54 | 38.0 | 2.80e-01 | 75.5% | 58.7% |
D3
medium
residues 350-405_456-487
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 57.5 | 1.10e-15 | 63.6% | 9.3% |
| PF02438.22 | Adeno_100 | 25.9 | 4.10e-06 | 38.6% | 5.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v11A00 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.63 | 46.0 | 3.00e-01 | 76.1% | 41.9% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 39.0 | 4.19e-01 | 75.0% | 74.7% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 3.91e-01 | 77.3% | 70.7% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 39.0 | 3.95e-01 | 72.7% | 82.8% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 37.0 | 3.92e-01 | 95.5% | 82.3% |
| 2nx2A00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 42.0 | 3.41e-01 | 93.2% | 98.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931613 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.62 | 46.0 | 3.61e-01 | 79.5% | 91.5% |
| 5001632 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.61 | 48.0 | 3.36e-01 | 84.1% | 77.9% |
| 4290940 | 3754.1.1.2 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1 | 0.52 | 46.0 | 3.17e-01 | 100.0% | 67.7% |
| 4286656 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.52 | 36.0 | 3.34e-01 | 71.6% | 81.8% |
| 3432828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.82e-01 | 88.6% | 62.0% |
D4
medium
residues 522-564_579-641
Domain cluster:
rep: 100K__YP_009174953__Simian_adenovirus_8__413258__D559-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 72.4 | 3.40e-20 | 100.0% | 18.2% |