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hexon_assembly_protein_100K
Euk-VirGoose_adenovirus_4
hexon_assembly_protein_100K__YP_006383567__Goose_adenovirus_4__1193422
Identity
- Accession:
- YP_006383567 ↗
- Protein ID:
- hexon_assembly_protein_100K
- Kingdom:
- euk
Quality
65.5
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Goose_adenovirus_4
TaxID: 1193422
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-84
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ncvA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.79 | 70.0 | 6.70e-01 | 100.0% | 85.7% |
| 2n1fA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.79 | 70.0 | 6.78e-01 | 100.0% | 87.6% |
| 2mpcA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.78 | 69.0 | 6.65e-01 | 96.2% | 85.6% |
| 4n1kD00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.78 | 71.0 | 6.73e-01 | 100.0% | 86.2% |
| 2l6aA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.78 | 68.0 | 6.26e-01 | 100.0% | 75.5% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.70 | 52.0 | 4.94e-01 | 80.0% | 79.6% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 50.0 | 4.73e-01 | 100.0% | 62.2% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 49.0 | 4.98e-01 | 76.2% | 96.2% |
| 1jr3C02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.68 | 50.0 | 4.40e-01 | 78.8% | 86.9% |
| 3b1fA02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.68 | 35.0 | 3.18e-01 | 76.2% | 35.1% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 34.0 | 3.08e-01 | 75.0% | 37.3% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.65 | 45.0 | 3.99e-01 | 73.8% | 86.1% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 33.0 | 3.35e-01 | 92.5% | 48.1% |
| 3tqsA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.63 | 46.0 | 4.97e-01 | 78.8% | 93.8% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 45.0 | 4.16e-01 | 76.2% | 59.0% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 33.0 | 3.40e-01 | 81.2% | 54.1% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.61 | 45.0 | 4.72e-01 | 77.5% | 98.6% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 47.0 | 4.37e-01 | 100.0% | 67.3% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.58 | 44.0 | 3.51e-01 | 81.2% | 64.0% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 33.0 | 3.62e-01 | 78.8% | 67.6% |
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 35.0 | 3.58e-01 | 91.3% | 62.8% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.56 | 39.0 | 3.08e-01 | 73.8% | 65.9% |
| 1w07A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 50.0 | 3.93e-01 | 100.0% | 67.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 48.0 | 4.46e-01 | 98.8% | 86.4% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 41.0 | 3.50e-01 | 82.5% | 70.7% |
| 3vkgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.54 | 48.0 | 3.96e-01 | 100.0% | 57.1% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 48.0 | 3.89e-01 | 100.0% | 61.9% |
| 3nq0A00 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.53 | 44.0 | 3.06e-01 | 93.8% | 83.4% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 43.0 | 4.15e-01 | 96.2% | 78.0% |
| 1eswA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 42.0 | 2.56e-01 | 87.5% | 14.0% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 37.0 | 3.02e-01 | 77.5% | 65.9% |
| 1wjtA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.52 | 36.0 | 3.36e-01 | 100.0% | 57.3% |
| 2hxoA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 35.0 | 3.02e-01 | 72.5% | 92.4% |
| 2iz1A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 43.0 | 3.06e-01 | 93.8% | 84.7% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 35.0 | 3.01e-01 | 72.5% | 71.7% |
| 4akgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.51 | 45.0 | 3.57e-01 | 100.0% | 51.2% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 42.0 | 4.27e-01 | 100.0% | 94.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3904838 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.87 | 76.0 | 7.27e-01 | 100.0% | 83.3% |
| 3877650 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.82 | 70.0 | 6.60e-01 | 100.0% | 77.9% |
| 3853376 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.81 | 74.0 | 6.95e-01 | 100.0% | 84.2% |
| 3534990 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.81 | 74.0 | 6.59e-01 | 100.0% | 72.7% |
| 3550046 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.81 | 73.0 | 6.72e-01 | 97.5% | 78.0% |
| 3552465 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.78 | 71.0 | 6.68e-01 | 100.0% | 84.2% |
| 3907048 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.78 | 68.0 | 6.84e-01 | 100.0% | 95.0% |
| 4029770 | 7572.1.1.0 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain | 0.61 | 44.0 | 3.19e-01 | 75.0% | 39.1% |
| 4961708 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.58 | 44.0 | 3.04e-01 | 81.2% | 51.8% |
| 3940232 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 32.0 | 2.96e-01 | 78.8% | 40.0% |
| 5025722 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 41.0 | 3.60e-01 | 75.0% | 77.3% |
| 5079313 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 40.0 | 3.06e-01 | 76.2% | 58.5% |
| 5072329 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 42.0 | 3.17e-01 | 93.8% | 33.0% |
| 4961969 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.54 | 48.0 | 2.98e-01 | 100.0% | 63.4% |
| 3541653 | 3464.1.1.20 ↗ | extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › FAM210A-B_dom | 0.53 | 45.0 | 4.29e-01 | 95.0% | 100.0% |
| 3518625 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.52 | 45.0 | 3.52e-01 | 100.0% | 80.5% |
| 3478692 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 36.0 | 2.45e-01 | 73.8% | 18.2% |
| 3730095 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.51 | 36.0 | 3.48e-01 | 76.2% | 82.1% |
| 4936980 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.51 | 45.0 | 4.00e-01 | 100.0% | 69.6% |
D2
medium
residues 296-412_621-655
Domain cluster:
rep: hexon_assembly_protein_100K__NP_040528__Human_mastadenovirus_C__129951__D157-224_243-286_500-563
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 139.3 | 1.90e-40 | 78.3% | 19.1% |
| PF02438.22 | Adeno_100 | 31.8 | 6.90e-08 | 25.0% | 5.6% |
D3
medium
residues 413-475_586-599
Domain cluster:
rep: 100K__YP_007985657__Fowl_aviadenovirus_5__172861__D538-592
D4
medium
residues 702-774
Domain cluster:
rep: 100K__YP_009174953__Simian_adenovirus_8__413258__D559-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 93.4 | 1.50e-26 | 100.0% | 12.5% |