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hexon_assembly_protein_100_kDa

Euk-Vir

Simian_adenovirus_DM-2014

hexon_assembly_protein_100_kDa__YP_009109586__Simian_adenovirus_DM-2014__1560346

Identity

Accession:: YP_009109586 ↗
Protein ID:: hexon_assembly_protein_100_kDa
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Simian_adenovirus_DM-2014

TaxID: 1560346

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 93-151

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6a3kA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.61	42.0	3.32e-01	72.9%	83.7%
2a2jA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.60	38.0	2.65e-01	79.7%	18.7%
2hyjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	42.0	3.18e-01	74.6%	86.4%
2lrmA00	1.10.890.30	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein	0.59	38.0	3.42e-01	74.6%	46.4%
1vt0k00	1.10.3230.20	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4)	0.58	46.0	3.59e-01	91.5%	39.3%
3mwmA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	34.0	3.24e-01	88.1%	42.7%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	44.0	3.51e-01	89.8%	78.4%
1bh9B00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.56	39.0	3.45e-01	72.9%	60.7%
2akoA00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.56	47.0	3.24e-01	100.0%	59.8%
1i51B00	3.30.70.1470	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like	0.56	43.0	3.76e-01	88.1%	54.3%
4mhcA01	1.20.58.1780	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	47.0	3.19e-01	100.0%	73.5%
2oqoA00	1.10.3810.10	Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like	0.55	44.0	3.21e-01	91.5%	34.8%
3rk6A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	44.0	3.02e-01	89.8%	47.5%
1gpeA03	3.30.560.10	Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3	0.54	44.0	2.86e-01	93.2%	48.7%
2oqcA00	3.60.60.10	Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A	0.54	44.0	2.85e-01	94.9%	95.3%
3euhC02	1.10.10.2260	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain	0.53	38.0	3.20e-01	78.0%	51.9%
7f16R01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	42.0	2.86e-01	96.6%	76.5%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.51	40.0	2.94e-01	89.8%	78.1%
1gzmA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	42.0	2.66e-01	93.2%	51.8%
3nv6A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	43.0	2.66e-01	100.0%	52.2%
6ui4A02	1.20.58.530	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	41.0	3.12e-01	94.9%	38.1%
7z8iC01	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.50	38.0	3.45e-01	83.1%	88.9%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4504172	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.61	42.0	3.54e-01	72.9%	88.6%
1763953	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.61	46.0	2.84e-01	83.1%	25.7%
3698817	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.58	40.0	3.35e-01	74.6%	79.1%
5078782	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.57	41.0	4.00e-01	79.7%	69.2%
3647744	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.56	40.0	3.16e-01	74.6%	93.6%
3642394	148.1.1.9 ↗	alpha arrays › Histone-like › Histone-related › Histone › TFIID_20kDa	0.55	39.0	3.10e-01	76.3%	44.8%
3335320	5054.1.1.1 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan	0.55	39.0	3.52e-01	79.7%	74.4%
3999694	109.26.1.12 ↗	alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_Nup160_C, TPR_NUP160_120_M	0.54	45.0	2.86e-01	93.2%	41.3%
4030562	190.1.1.3 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2	0.54	42.0	3.99e-01	100.0%	70.7%
4940273	876.1.1.0 ↗	a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin	0.53	35.0	3.33e-01	91.5%	54.7%
3222049	148.1.1.7 ↗	alpha arrays › Histone-like › Histone-related › Histone › TAF	0.53	37.0	3.24e-01	72.9%	56.7%
3283276	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	43.0	3.10e-01	93.2%	82.2%
3739884	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.52	38.0	3.04e-01	79.7%	55.0%
3553587	558.1.1.21 ↗	alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N	0.52	37.0	2.99e-01	74.6%	84.3%
4936266	244.3.1.7 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › DUF166	0.52	42.0	3.67e-01	91.5%	80.0%
3583484	558.1.1.21 ↗	alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N	0.51	33.0	3.02e-01	72.9%	45.9%
4026719	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	34.0	2.76e-01	81.4%	32.8%
4976386	2007.1.3.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6	0.51	43.0	2.98e-01	100.0%	48.1%

D2 medium residues 152-252

PDB

Domain cluster: rep: 100K__YP_009174953__Simian_adenovirus_8__413258__D149-260

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	47.8	9.20e-13	100.0%	16.4%

D3 medium residues 253-271_289-332_423-448

PDB

Domain cluster: rep: 100K__YP_004782112__Bat_adenovirus_2__696069__D118-133_208-234_249-267_354-380

D4 medium residues 333-422_449-553

PDB

Domain cluster: rep: 100_kDa_protein__YP_009389502__red_squirrel_adenovirus_1__2773314__D240-255_295-541

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	98.8	3.30e-28	53.8%	18.7%
PF02438.22	Adeno_100	99.1	2.70e-28	47.7%	15.2%