←Back to structures

highly_derived_D5-like_helicase-primase

Euk-Vir

Brazilian_marseillevirus

highly_derived_D5-like_helicase-primase__YP_009238567__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238567 ↗
Protein ID:
highly_derived_D5-like_helicase-primase
Kingdom:
euk

Quality

70.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 379-490
PDB
D2 high residues 730-804
PDB
Domain cluster: rep: MK764448.1__QCW20633.1__X__00003__D396-466
CATH (76)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 69.0 6.88e-01 97.3% 94.7%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.66e-01 100.0% 69.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.21e-01 100.0% 65.7%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 63.0 6.15e-01 100.0% 93.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.37e-01 100.0% 81.8%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.30e-01 100.0% 77.6%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.69e-01 100.0% 63.7%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.28e-01 100.0% 45.6%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.17e-01 100.0% 76.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.01e-01 100.0% 69.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.89e-01 100.0% 70.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.04e-01 100.0% 41.1%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.88e-01 100.0% 71.8%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.01e-01 100.0% 76.8%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.11e-01 98.7% 77.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.29e-01 100.0% 79.8%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.66 59.0 5.80e-01 100.0% 95.0%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.02e-01 97.3% 77.1%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.20e-01 100.0% 85.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.15e-01 100.0% 80.5%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.88e-01 100.0% 74.1%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.99e-01 100.0% 76.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.58e-01 100.0% 64.5%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.90e-01 100.0% 72.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.12e-01 100.0% 90.6%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.11e-01 100.0% 79.8%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.82e-01 100.0% 72.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.86e-01 100.0% 36.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.53e-01 100.0% 62.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.28e-01 100.0% 85.5%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.09e-01 97.3% 44.4%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.84e-01 100.0% 66.3%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.96e-01 100.0% 79.3%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.73e-01 100.0% 72.1%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.87e-01 100.0% 73.6%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 5.20e-01 100.0% 96.9%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.52e-01 100.0% 59.8%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.06e-01 100.0% 75.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.99e-01 100.0% 70.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.17e-01 100.0% 90.7%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.52e-01 100.0% 70.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.36e-01 96.0% 62.8%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.62e-01 100.0% 76.9%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.40e-01 100.0% 62.4%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.84e-01 97.3% 85.9%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.84e-01 100.0% 69.8%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.06e-01 96.0% 52.1%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.61e-01 100.0% 67.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.52e-01 100.0% 71.3%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.98e-01 100.0% 98.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.89e-01 98.7% 100.0%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.97e-01 100.0% 53.7%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.53e-01 100.0% 73.6%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.05e-01 100.0% 58.6%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.32e-01 100.0% 76.4%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.89e-01 100.0% 97.1%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.39e-01 97.3% 76.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.52e-01 98.7% 76.2%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.94e-01 100.0% 89.2%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.59 51.0 4.71e-01 100.0% 75.2%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.27e-01 98.7% 55.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.63e-01 100.0% 71.4%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 5.07e-01 100.0% 98.7%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.57 48.0 4.51e-01 98.7% 81.6%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 40.0 4.37e-01 94.7% 91.9%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 4.24e-01 100.0% 94.8%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.06e-01 96.0% 78.8%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.88e-01 100.0% 69.1%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 45.0 4.46e-01 100.0% 96.3%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 36.0 3.65e-01 93.3% 72.0%
4ifdI01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 4.12e-01 90.7% 95.3%
3qxyA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.52 39.0 2.76e-01 81.3% 54.9%
1khvA04 6.10.140.320 Special › Helix non-globular › Helix Hairpins › 0.52 35.0 3.98e-01 77.3% 96.3%
3b8oA01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.52 36.0 2.69e-01 76.0% 52.3%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 38.0 3.95e-01 100.0% 87.1%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 37.0 2.72e-01 81.3% 78.2%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.79 73.0 6.97e-01 100.0% 91.8%
3729476 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.79 71.0 6.04e-01 100.0% 63.5%
3249045 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.77 69.0 5.67e-01 100.0% 56.2%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.76 70.0 6.44e-01 100.0% 78.9%
3688358 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.76 70.0 6.84e-01 100.0% 93.8%
3537242 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.76 70.0 6.27e-01 100.0% 75.0%
3689786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 4.97e-01 100.0% 41.8%
5080644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 6.41e-01 100.0% 93.3%
4996559 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 6.24e-01 100.0% 96.0%
5044704 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 4.00e-01 100.0% 27.3%
4968041 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.71 56.0 4.47e-01 100.0% 44.1%
5080189 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.35e-01 100.0% 65.5%
3512685 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 62.0 5.06e-01 100.0% 63.3%
3355197 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.46e-01 100.0% 71.0%
3576823 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.70 56.0 4.68e-01 100.0% 51.2%
3550061 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 56.0 4.99e-01 100.0% 62.9%
3275982 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 62.0 4.52e-01 100.0% 38.0%
3479827 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.29e-01 100.0% 75.0%
4947812 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.38e-01 100.0% 50.0%
2683 101.1.2.225 ↗ alpha arrays › HTH › HTH › winged helix domain › F-93_WHD 0.68 52.0 4.91e-01 100.0% 67.0%
3989662 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.68 53.0 4.48e-01 100.0% 50.4%
3472278 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.68 55.0 5.57e-01 100.0% 89.3%
3465977 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 58.0 3.76e-01 100.0% 20.6%
4068860 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.68 52.0 4.52e-01 100.0% 52.5%
3890162 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.68 57.0 5.80e-01 100.0% 94.7%
3406884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 4.20e-01 100.0% 32.0%
3598997 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.68 55.0 5.31e-01 100.0% 78.8%
3926383 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.68 59.0 4.80e-01 100.0% 60.1%
3463151 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.65e-01 100.0% 49.0%
4026719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 5.06e-01 100.0% 64.0%
3167842 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.67 52.0 4.92e-01 100.0% 70.0%
2137469 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 53.0 4.35e-01 100.0% 45.5%
3990493 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 5.71e-01 100.0% 85.6%
5005519 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 56.0 4.89e-01 100.0% 61.4%
3951002 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.67 52.0 4.33e-01 100.0% 47.4%
5001284 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 57.0 4.53e-01 100.0% 45.6%
3995114 101.1.2.164 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.67 50.0 4.46e-01 98.7% 55.5%
4588402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.89e-01 100.0% 97.3%
4945186 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.57e-01 100.0% 52.3%
3958889 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.20e-01 100.0% 40.0%
3622222 101.1.2.164 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.66 50.0 5.29e-01 98.7% 93.8%
5071263 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 5.06e-01 100.0% 74.4%
3257174 101.1.2.148 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.66 58.0 4.89e-01 100.0% 74.6%
4978424 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 56.0 4.85e-01 100.0% 60.0%
4996031 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.22e-01 96.0% 78.8%
3587913 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.66 51.0 4.27e-01 100.0% 48.5%
4991088 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.10e-01 100.0% 81.2%
5031662 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 54.0 4.62e-01 100.0% 55.2%
3541292 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.25e-01 100.0% 71.4%
4927083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.93e-01 100.0% 71.3%
2602 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.66 50.0 4.34e-01 100.0% 51.6%
4971686 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 56.0 5.06e-01 100.0% 69.5%
3597746 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.65 53.0 5.25e-01 100.0% 85.0%
4999532 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 55.0 3.94e-01 100.0% 30.6%
4978596 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 55.0 4.75e-01 100.0% 58.4%
4995459 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 51.0 4.42e-01 97.3% 54.2%
5014176 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 55.0 4.35e-01 100.0% 45.0%
4944051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.21e-01 100.0% 41.8%
5031473 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 54.0 4.89e-01 100.0% 67.6%
5046227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.24e-01 100.0% 83.5%
3503213 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.65 58.0 5.40e-01 100.0% 96.8%
3714221 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.32e-01 100.0% 88.7%
3786852 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.64 53.0 5.18e-01 100.0% 83.5%
3956796 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.64 53.0 4.08e-01 100.0% 38.4%
4947503 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.29e-01 100.0% 45.0%
3880787 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.64 53.0 4.75e-01 100.0% 64.5%
4947811 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.34e-01 100.0% 55.7%
4994340 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 51.0 4.21e-01 100.0% 47.9%
4990274 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 52.0 4.73e-01 100.0% 65.7%
5024398 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 50.0 4.26e-01 100.0% 50.8%
5009323 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 51.0 4.12e-01 100.0% 44.2%
3587894 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.63 52.0 4.04e-01 98.7% 40.0%
4959456 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 53.0 4.15e-01 100.0% 42.4%
3979431 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 52.0 4.21e-01 100.0% 46.7%
4229465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 5.06e-01 100.0% 86.3%
5075009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.82e-01 100.0% 73.7%
3937499 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.62 53.0 4.30e-01 98.7% 48.7%
3951258 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 50.0 4.07e-01 100.0% 45.3%
3497764 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.62 50.0 4.84e-01 100.0% 78.7%
3821340 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.62 53.0 4.29e-01 100.0% 49.7%
5072114 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 52.0 4.21e-01 100.0% 48.0%
5049164 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 52.0 4.44e-01 100.0% 56.2%
3960412 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.11e-01 100.0% 48.6%
3483446 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.81e-01 100.0% 74.7%
4958724 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 48.0 4.38e-01 100.0% 63.8%
3963083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.29e-01 100.0% 53.3%
5049162 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 49.0 3.83e-01 100.0% 40.6%
3412336 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.95e-01 100.0% 84.7%
4983405 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 49.0 3.87e-01 100.0% 42.3%
4513524 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 50.0 4.15e-01 98.7% 50.3%
4990701 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 4.30e-01 100.0% 56.2%
169108 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 51.0 4.63e-01 100.0% 71.4%
1299892 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.59 49.0 4.35e-01 100.0% 63.2%
5077445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.09e-01 100.0% 54.2%
4934352 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 49.0 3.81e-01 100.0% 41.1%
4992821 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.83e-01 96.0% 50.0%
3939862 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 42.0 3.72e-01 85.3% 89.1%
D3 medium residues 18-100_202-233
PDB
Domain cluster: rep: origin_of_replication-binding_protein__YP_009345590__Noumeavirus__1955558__D99-190_290-327
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1es7B00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 38.0 4.33e-01 77.4% 90.4%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 32.0 3.79e-01 87.8% 82.9%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.55 34.0 3.98e-01 80.9% 92.1%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.50 40.0 3.54e-01 86.1% 86.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3717917 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.82 76.0 5.13e-01 96.5% 92.3%
3937694 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.81 72.0 5.32e-01 93.9% 89.4%
3610883 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.79 73.0 5.06e-01 97.4% 99.4%
3512046 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.78 69.0 5.20e-01 93.0% 93.3%
3802060 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.76 68.0 5.07e-01 93.0% 89.0%
3677440 862.1.1.11 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R 0.76 67.0 5.10e-01 93.0% 93.1%
3492512 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.74 66.0 4.70e-01 95.7% 90.0%
3717098 862.1.1.7 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 0.69 61.0 4.46e-01 94.8% 88.6%
4404464 242.3.1.1 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.51 33.0 3.36e-01 93.0% 67.3%
3388962 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.50 31.0 3.48e-01 78.3% 80.0%
D4 medium residues 265-341
PDB
D5 medium residues 506-551_660-682_703-729
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zajA01 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.52 26.0 2.71e-01 78.1% 47.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269680 5050.1.1.8 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 0.50 39.0 2.87e-01 84.4% 99.6%
D6 medium residues 552-659_683-702
PDB
Domain cluster: rep: highly_derived_D5-like_helicase-primase__YP_003406787__Marseillevirus_marseillevirus__694581__D555-677
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 71.7 1.10e-19 85.9% 89.4%