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histone_2A-domain-containing_protein
Euk-VirGolden_Marseillevirus
histone_2A-domain-containing_protein__YP_009310186__Golden_Marseillevirus__1720526
Identity
- Accession:
- YP_009310186 ↗
- Protein ID:
- histone_2A-domain-containing_protein
- Kingdom:
- euk
Quality
67.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Golden_Marseillevirus
TaxID: 1720526
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-130_157-184
Domain cluster:
rep: histone_H2A_domain-containing_protein__YP_009345564__Noumeavirus__1955558__D51-161
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q9cA01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.80 | 68.0 | 6.71e-01 | 89.1% | 83.0% |
| 1f1eA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.73 | 65.0 | 6.30e-01 | 94.9% | 87.4% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 33.0 | 3.42e-01 | 100.0% | 50.0% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 40.0 | 4.24e-01 | 100.0% | 77.0% |
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 37.0 | 3.57e-01 | 83.3% | 54.0% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.57 | 35.0 | 3.45e-01 | 97.8% | 55.6% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 43.0 | 3.21e-01 | 100.0% | 32.9% |
| 5v89A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 32.0 | 3.76e-01 | 87.7% | 88.6% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 29.0 | 3.93e-01 | 98.6% | 100.0% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 37.0 | 3.71e-01 | 100.0% | 67.4% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.53 | 34.0 | 4.16e-01 | 76.1% | 98.9% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.53 | 32.0 | 3.51e-01 | 98.6% | 71.9% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.52 | 32.0 | 3.41e-01 | 100.0% | 68.3% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 35.0 | 3.66e-01 | 100.0% | 74.4% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 38.0 | 3.50e-01 | 100.0% | 59.4% |
| 3nf2A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 40.0 | 3.03e-01 | 83.3% | 97.0% |
| 4ol8B03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 29.0 | 3.50e-01 | 88.4% | 86.7% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.50 | 28.0 | 3.29e-01 | 91.3% | 77.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3268260 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.89 | 80.0 | 7.03e-01 | 93.5% | 77.4% |
| 3750322 | 148.1.1.32 ↗ | alpha arrays › Histone-like › Histone-related › Histone › PF26281 | 0.87 | 77.0 | 6.93e-01 | 92.8% | 84.4% |
| 3749242 | 148.1.1.32 ↗ | alpha arrays › Histone-like › Histone-related › Histone › PF26281 | 0.83 | 77.0 | 6.55e-01 | 97.1% | 81.0% |
| 3992206 | 148.1.1.32 ↗ | alpha arrays › Histone-like › Histone-related › Histone › PF26281 | 0.81 | 66.0 | 6.37e-01 | 85.5% | 87.1% |
| 4989561 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.75 | 65.0 | 6.38e-01 | 93.5% | 85.9% |
| 3362581 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.62 | 34.0 | 3.29e-01 | 100.0% | 45.0% |
| 4019589 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.58 | 36.0 | 2.96e-01 | 97.8% | 34.0% |
| 3958420 | 3352.1.1.3 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT | 0.55 | 50.0 | 3.47e-01 | 98.6% | 96.7% |
| 3228662 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 42.0 | 3.33e-01 | 100.0% | 39.3% |
| 4269439 | 150.1.2.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Phenol_Hydrox | 0.55 | 38.0 | 2.94e-01 | 100.0% | 30.0% |
| 3270239 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.54 | 34.0 | 3.68e-01 | 98.6% | 74.8% |
| 3712437 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 46.0 | 4.41e-01 | 96.4% | 92.7% |
| 5030740 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.53 | 40.0 | 4.02e-01 | 100.0% | 75.2% |
| 54405 | 601.1.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 | 0.51 | 33.0 | 3.17e-01 | 99.3% | 53.9% |
| 3967319 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.51 | 34.0 | 3.63e-01 | 100.0% | 76.0% |
| 3285707 | 5051.1.1.28 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › PHO4 | 0.50 | 45.0 | 3.36e-01 | 100.0% | 99.2% |