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histone_H2A_domain-containing_protein

Euk-Vir

Noumeavirus

histone_H2A_domain-containing_protein__YP_009345564__Noumeavirus__1955558

Identity

Accession:
YP_009345564 ↗
Protein ID:
histone_H2A_domain-containing_protein
Kingdom:
euk

Quality

86.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-161
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00808.30 best CBFD_NFYB_HMF 27.8 3.40e-06 57.7% 95.4%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q9cA01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.92 80.0 7.09e-01 92.8% 67.3%
4nftC00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.91 86.0 7.18e-01 100.0% 70.8%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.81 67.0 6.01e-01 100.0% 64.9%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.77 54.0 5.71e-01 73.0% 80.6%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.64 48.0 5.31e-01 94.6% 96.7%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 33.0 3.70e-01 92.8% 71.6%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.56 27.0 3.52e-01 84.7% 84.2%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.55 33.0 3.43e-01 75.7% 63.7%
4dvyP03 1.20.120.1270 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CagA exotoxin domain III 0.54 41.0 3.61e-01 79.3% 71.3%
3rrwB01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.54 49.0 4.12e-01 99.1% 75.3%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 29.0 3.21e-01 97.3% 64.4%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 36.0 3.46e-01 82.9% 64.3%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 38.0 3.23e-01 79.3% 92.8%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.50 36.0 3.10e-01 76.6% 86.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 38.0 3.78e-01 84.7% 76.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268260 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.94 90.0 7.26e-01 100.0% 59.5%
1761407 148.1.1.36 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone, PF26281 0.94 90.0 7.35e-01 100.0% 69.9%
3850897 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.93 89.0 7.33e-01 99.1% 63.3%
3901020 148.1.1.3 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C 0.90 82.0 6.72e-01 100.0% 58.3%
4002595 148.1.1.47 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone, CENP-T_C 0.87 77.0 6.75e-01 100.0% 66.5%
4989561 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.84 70.0 6.24e-01 100.0% 65.1%
3519991 148.1.1.3 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C 0.83 80.0 6.27e-01 100.0% 57.6%
3598633 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.82 57.0 6.47e-01 73.0% 92.9%
3789652 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.81 54.0 5.07e-01 73.0% 57.7%
2142363 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.80 55.0 6.19e-01 70.3% 89.7%
3670131 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.80 55.0 5.11e-01 70.3% 59.3%
3662855 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.78 55.0 5.83e-01 73.9% 81.0%
3810616 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.78 59.0 5.95e-01 80.2% 79.1%
2994519 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.77 57.0 6.16e-01 91.9% 89.5%
3664076 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.76 52.0 5.24e-01 78.4% 70.0%
4026735 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.76 61.0 6.03e-01 83.8% 85.2%
3927300 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.76 61.0 6.15e-01 83.8% 92.7%
3272748 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.75 60.0 5.54e-01 83.8% 67.9%
3696451 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.75 61.0 5.57e-01 86.5% 76.6%
3371994 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.74 59.0 5.68e-01 83.8% 75.2%
3421885 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.73 59.0 5.73e-01 83.8% 78.3%
3785081 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.73 53.0 5.14e-01 73.9% 69.2%
3737033 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.73 52.0 5.04e-01 73.9% 65.6%
4178971 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.73 52.0 5.13e-01 73.9% 70.0%
3577339 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.66 57.0 5.77e-01 90.1% 93.6%