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holliday_junction_resolvase
Euk-VirChoristoneura_rosaceana_entomopoxvirus_L
holliday_junction_resolvase__YP_008004576__Choristoneura_rosaceana_entomopoxvirus_L__1293539
Identity
- Accession:
- YP_008004576 ↗
- Protein ID:
- holliday_junction_resolvase
- Kingdom:
- euk
Quality
86.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Choristoneura_rosaceana_entomopoxvirus_'L'
TaxID: 1293539
Cluster
View cluster (38 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-95
Domain cluster:
rep: hypothetical_protein_D1R72_gp111__YP_009507508__Heterosigma_akashiwo_virus_01__97195__D1-105
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04848.20 best | Pox_A22 | 74.0 | 2.00e-20 | 100.0% | 62.2% |
D2
medium
residues 96-163
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04848.20 best | Pox_A22 | 54.3 | 2.30e-14 | 85.3% | 35.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hqvA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 44.0 | 3.24e-01 | 80.9% | 73.0% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.51 | 35.0 | 3.34e-01 | 70.6% | 79.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3918791 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.55 | 40.0 | 3.07e-01 | 75.0% | 61.9% |
| 3832236 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.55 | 37.0 | 3.75e-01 | 72.1% | 68.6% |
| 3295264 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 36.0 | 3.42e-01 | 77.9% | 55.3% |
| 4591238 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.54 | 42.0 | 4.08e-01 | 100.0% | 76.2% |
| 3670680 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 43.0 | 2.73e-01 | 94.1% | 40.5% |