←Back to structures

hypothetical_protein_1

Euk-Vir

Hubei_sobemo-like_virus_47

hypothetical_protein_1__YP_009329995__Hubei_sobemo-like_virus_47__1923235

Identity

Accession:
YP_009329995 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

62.7 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_47

TaxID: 1923235

Cluster

View cluster (38 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 136-161_246-318
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009337259__Shuangao_sobemo-like_virus_2__1923475__D83-106_193-282
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 66.0 6.58e-01 84.8% 86.1%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 69.0 6.50e-01 89.9% 80.9%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 66.0 5.92e-01 87.9% 87.3%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 68.0 6.64e-01 89.9% 95.2%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.79 60.0 4.87e-01 79.8% 91.1%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 61.0 6.11e-01 84.8% 79.2%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 55.0 5.38e-01 72.7% 81.9%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 54.0 5.52e-01 71.7% 88.3%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 59.0 5.80e-01 81.8% 93.5%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 59.0 5.96e-01 81.8% 92.9%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 47.0 5.08e-01 70.7% 75.6%
1gvzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 62.0 5.74e-01 89.9% 95.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.66 38.0 4.59e-01 75.8% 88.7%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 40.0 3.89e-01 70.7% 94.8%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 4.43e-01 77.8% 88.6%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 40.0 3.52e-01 72.7% 81.3%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 40.0 3.48e-01 72.7% 75.3%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 39.0 4.37e-01 77.8% 89.7%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 38.0 3.64e-01 75.8% 59.8%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 42.0 4.53e-01 78.8% 91.7%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 37.0 3.42e-01 74.7% 74.8%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.83e-01 88.9% 82.6%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.97e-01 87.9% 96.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969197 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 71.0 5.06e-01 87.9% 91.3%
None — 0.85 72.0 5.47e-01 89.9% 89.7%
None — 0.84 73.0 5.48e-01 90.9% 89.9%
None — 0.84 72.0 5.43e-01 89.9% 89.8%
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 68.0 5.37e-01 84.8% 94.6%
4387060 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 70.0 5.27e-01 87.9% 87.4%
None — 0.83 70.0 5.30e-01 87.9% 89.5%
4205419 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.83 70.0 5.20e-01 88.9% 90.9%
3517450 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 67.0 3.84e-01 84.8% 28.9%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.82 63.0 4.88e-01 79.8% 42.1%
3220497 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.79 59.0 4.49e-01 78.8% 81.4%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 59.0 4.57e-01 79.8% 46.1%
3246847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 57.0 4.47e-01 78.8% 82.1%
3222818 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.73 58.0 4.28e-01 85.9% 82.0%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 56.0 4.14e-01 81.8% 84.2%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 56.0 4.36e-01 81.8% 89.5%
4015954 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 54.0 4.10e-01 80.8% 86.0%
3960362 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 52.0 4.93e-01 94.9% 87.8%
3417047 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 37.0 4.42e-01 75.8% 98.5%
3979552 219.1.1.90 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1287 0.56 40.0 3.36e-01 74.7% 85.7%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 45.0 4.32e-01 86.9% 99.1%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.56 40.0 3.56e-01 74.7% 91.3%
1323359 3590.1.1.0 ↗ a+b complex topology › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain 0.54 38.0 3.45e-01 72.7% 81.2%
3964905 5084.1.1.13 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HpuA 0.53 39.0 2.91e-01 77.8% 67.7%
4519111 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 39.0 4.05e-01 81.8% 83.3%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 39.0 3.95e-01 78.8% 90.0%
3811811 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 39.0 3.33e-01 81.8% 92.4%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.51 32.0 3.48e-01 78.8% 74.1%
3807907 2492.1.1.60 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1, dCMP_cyt_deam_2 0.51 39.0 3.14e-01 84.8% 100.0%
1202176 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.50 38.0 3.12e-01 80.8% 78.4%
D2 medium residues 162-245
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009329993__Hubei_sobemo-like_virus_6__1923239__D113-207
D3 medium residues 319-399
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009330002__Hubei_sobemo-like_virus_46__1923234__D303-360