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hypothetical_protein_1

Euk-Vir

Beihai_sobemo-like_virus_10

hypothetical_protein_1__YP_009330021__Beihai_sobemo-like_virus_10__1922681

Identity

Accession:
YP_009330021 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

68.3 mean pLDDT

Taxonomy

Beihai_sobemo-like_virus_10

TaxID: 1922681

Cluster

View cluster (38 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1069-1134
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009336949__Beihai_sobemo-like_virus_9__1922706__D966-1030
D2 medium residues 1-82
PDB
D3 medium residues 99-136
PDB
D4 medium residues 148-171_261-378
PDB
D5 medium residues 594-612_759-928_996-1006
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pggA01 3.90.1730.10 Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain 0.56 48.0 3.95e-01 89.0% 64.7%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 34.0 3.82e-01 88.0% 87.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.72 63.0 4.98e-01 90.5% 58.2%
1875037 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.72 63.0 4.93e-01 90.5% 56.1%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.70 61.0 4.83e-01 90.5% 57.2%
None — 0.70 61.0 4.83e-01 90.5% 57.1%
3267570 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.64 55.0 4.52e-01 90.5% 51.7%
4019374 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 48.0 3.83e-01 90.5% 64.7%
3241316 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 48.0 3.99e-01 100.0% 63.9%
D6 medium residues 929-995_1007-1025
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.75 65.0 4.03e-01 96.5% 28.6%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.26e-01 73.3% 72.0%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.56 49.0 3.95e-01 98.8% 85.2%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 43.0 3.13e-01 84.9% 72.7%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 39.0 3.20e-01 79.1% 63.6%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 39.0 3.23e-01 77.9% 49.1%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 3.29e-01 75.6% 50.0%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.75e-01 82.6% 55.8%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 38.0 2.85e-01 76.7% 64.6%
3c7aA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 38.0 2.97e-01 77.9% 79.3%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 38.0 3.07e-01 77.9% 46.7%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 40.0 3.01e-01 89.5% 92.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3456330 101.1.2.516 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25895 0.64 34.0 2.83e-01 79.1% 29.7%
4064450 316.1.1.17 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.61 43.0 2.99e-01 73.3% 23.3%
3838344 5051.1.1.11 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › CstA 0.55 47.0 2.88e-01 97.7% 69.7%
3211803 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 38.0 3.74e-01 74.4% 68.4%
4995043 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.54 39.0 2.75e-01 77.9% 65.2%
4889091 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.52 36.0 2.42e-01 73.3% 78.3%
3595202 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 2.78e-01 77.9% 39.1%