hypothetical_protein_1

Euk-Vir

Changjiang_tombus-like_virus_15

hypothetical_protein_1__YP_009330074__Changjiang_tombus-like_virus_15__1922808

Identity

84.9 mean pLDDT

Changjiang_tombus-like_virus_15

TaxID: 1922808

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 357-499

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	46.4	3.50e-12	86.0%	27.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vb5A01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.64	32.0	3.84e-01	90.9%	70.2%
6f8hC00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.58	26.0	3.22e-01	86.0%	64.5%
1nh1A01	1.10.3290.20	Mainly Alpha › Orthogonal Bundle › Fic-like fold ›	0.56	31.0	2.85e-01	87.4%	38.3%
3zheA02	1.25.40.760	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	40.0	3.54e-01	84.6%	90.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3957396	268.1.1.0 ↗	a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related	0.54	23.0	2.52e-01	71.3%	44.8%

D2 medium residues 40-67_133-150_254-275

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4id8A00	3.30.70.20	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	28.0	2.87e-01	85.3%	52.3%
3egiA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	44.0	3.22e-01	100.0%	93.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3733317	4.6.1.0 ↗	beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain	0.51	28.0	2.50e-01	88.2%	35.0%

D3 medium residues 180-219_276-356

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	113.7	1.40e-32	66.9%	16.7%
PF00998.29	RdRP_3	54.2	1.50e-14	33.9%	8.4%