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hypothetical_protein_1

Euk-Vir

Hubei_sobemo-like_virus_29

hypothetical_protein_1__YP_009330083__Hubei_sobemo-like_virus_29__1923215

Identity

Accession:
YP_009330083 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

64.0 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_29

TaxID: 1923215

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 186-350
PDB
Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_529550_615-1154__Newbury_agent_1__331642__D396-536
D2 medium residues 44-112
PDB
D3 medium residues 447-481
PDB
D4 medium residues 485-534
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5k5iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.86 49.0 4.87e-01 74.0% 55.8%
6e94A02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.74 53.0 5.10e-01 76.0% 73.2%
1x6hA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.74 48.0 4.06e-01 92.0% 39.5%
2mdgA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 44.0 4.28e-01 94.0% 63.6%
3hcsA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 4.54e-01 78.0% 96.2%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 44.0 3.69e-01 76.0% 61.4%
5b3hC01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 40.0 4.09e-01 72.0% 72.9%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 30.0 2.46e-01 98.0% 26.9%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 39.0 2.97e-01 82.0% 39.4%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 43.0 2.55e-01 98.0% 76.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 2.80e-01 80.0% 63.8%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 42.0 2.87e-01 98.0% 59.6%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 39.0 2.72e-01 96.0% 52.9%
2xsbA02 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.51 35.0 2.64e-01 76.0% 63.8%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 35.0 2.33e-01 76.0% 18.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416658 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.85 46.0 4.07e-01 78.0% 38.6%
3241104 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 47.0 5.52e-01 92.0% 80.0%
3181380 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 55.0 6.29e-01 84.0% 97.1%
4014357 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.83 52.0 4.23e-01 72.0% 37.6%
3256174 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.83 56.0 6.51e-01 72.0% 100.0%
3882254 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.82 72.0 6.06e-01 100.0% 58.8%
3860027 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 52.0 6.09e-01 72.0% 97.1%
3316724 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 53.0 6.27e-01 72.0% 100.0%
4002002 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 52.0 4.89e-01 92.0% 58.3%
3397207 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.77 48.0 3.36e-01 78.0% 22.1%
3892719 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 54.0 4.76e-01 100.0% 51.4%
3939505 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.76 52.0 5.77e-01 92.0% 90.0%
3771692 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.76 53.0 5.35e-01 74.0% 96.0%
3203321 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.74 52.0 5.23e-01 74.0% 94.0%
5053453 386.1.1.74 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-Di19 0.73 52.0 5.00e-01 74.0% 74.5%
3790110 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 51.0 3.68e-01 76.0% 26.9%
3401049 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.71 50.0 4.45e-01 74.0% 72.9%
3910229 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.71 49.0 4.93e-01 74.0% 72.0%
3414000 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 55.0 5.54e-01 86.0% 86.0%
3410995 386.1.1.264 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_jaz 0.70 50.0 4.69e-01 76.0% 85.0%
4416003 386.1.1.2 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 49.0 4.07e-01 74.0% 62.4%
3571301 386.1.1.112 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.69 48.0 3.81e-01 74.0% 74.0%
3774881 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.69 48.0 4.29e-01 78.0% 50.7%
3881310 386.1.1.233 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2 0.69 45.0 3.68e-01 94.0% 37.8%
None — 0.68 48.0 4.69e-01 74.0% 72.7%
4001398 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 47.0 3.98e-01 72.0% 61.3%
3401265 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.68 49.0 4.47e-01 76.0% 80.0%
3411508 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.67 47.0 4.60e-01 74.0% 70.9%
3508793 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 47.0 4.30e-01 74.0% 62.5%
3762963 386.1.1.268 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_15 0.67 47.0 4.72e-01 74.0% 80.0%
3216512 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 50.0 4.29e-01 82.0% 52.5%
3560844 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.66 46.0 4.22e-01 74.0% 58.5%
3538555 386.1.1.108 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_2 0.66 46.0 4.38e-01 74.0% 66.7%
3841514 386.1.1.242 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 0.66 46.0 3.88e-01 74.0% 47.1%
3534420 386.1.1.262 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_16 0.66 46.0 4.03e-01 74.0% 53.3%
4560864 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.66 46.0 4.22e-01 74.0% 60.0%
3890764 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 55.0 4.46e-01 96.0% 51.1%
3903023 386.1.1.262 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_16 0.65 46.0 4.50e-01 74.0% 72.7%
None — 0.65 45.0 4.43e-01 74.0% 72.7%
3405745 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 44.0 4.38e-01 74.0% 74.5%
3991787 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 45.0 4.43e-01 74.0% 70.9%
3512726 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 46.0 4.50e-01 74.0% 73.6%
3413043 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 45.0 4.13e-01 74.0% 60.0%
3874785 386.1.1.245 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_6 0.63 45.0 3.91e-01 76.0% 63.7%
3486562 386.1.1.242 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 0.63 44.0 4.16e-01 74.0% 83.3%
3241929 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.63 50.0 4.88e-01 90.0% 89.1%
3919764 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.63 44.0 3.71e-01 74.0% 47.1%
3907866 386.1.1.125 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_16 0.62 43.0 4.24e-01 74.0% 72.7%
3939849 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 52.0 3.83e-01 100.0% 32.3%
3485009 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.61 48.0 4.33e-01 86.0% 68.6%
4352411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 42.0 4.27e-01 74.0% 80.0%
3868799 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 50.0 4.33e-01 100.0% 57.6%
4195872 556.1.1.0 ↗ alpha arrays › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) 0.61 53.0 4.09e-01 98.0% 99.1%
3808474 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 41.0 3.78e-01 74.0% 69.3%
3339038 386.1.1.57 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF 0.60 43.0 4.31e-01 78.0% 80.0%
3494721 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 49.0 4.50e-01 92.0% 67.7%
3539459 386.1.1.3 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.59 41.0 4.17e-01 76.0% 80.0%
3869223 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 48.0 4.12e-01 90.0% 87.5%
3348294 386.1.1.3 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.59 42.0 4.24e-01 76.0% 82.0%
3992176 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.59 46.0 3.99e-01 96.0% 91.1%
3486486 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 45.0 3.87e-01 96.0% 76.3%
3571398 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.55 47.0 3.15e-01 96.0% 64.5%
3414376 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.55 47.0 3.82e-01 96.0% 52.6%
3778009 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 42.0 4.21e-01 88.0% 92.0%
3203481 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 43.0 4.25e-01 100.0% 92.7%
3637640 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.52 46.0 3.77e-01 98.0% 56.7%