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hypothetical_protein_1

Euk-Vir

Hubei_myriapoda_virus_8

hypothetical_protein_1__YP_009330111__Hubei_myriapoda_virus_8__1922937

Identity

Accession:
YP_009330111 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

50.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Jingchuvirales› Myriaviridae› Myriavirus› Hubei_myriapoda_virus_8

TaxID: 1922937

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 292-409
PDB
D2 medium residues 193-291
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 50.0 4.44e-01 98.0% 93.3%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 41.0 3.81e-01 98.0% 60.2%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.57 42.0 3.76e-01 78.8% 68.5%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.57 36.0 3.82e-01 93.9% 71.6%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.56 40.0 3.58e-01 100.0% 51.4%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 33.0 3.31e-01 99.0% 56.2%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.55 36.0 3.79e-01 92.9% 72.8%
3u4qA02 1.10.274.50 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.54 41.0 3.68e-01 83.8% 73.3%
1z6oA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 45.0 3.62e-01 100.0% 85.8%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 3.59e-01 81.8% 75.0%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 40.0 3.68e-01 83.8% 74.0%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 33.0 3.52e-01 93.9% 75.6%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 34.0 3.41e-01 79.8% 65.1%
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.50 41.0 3.52e-01 89.9% 83.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3915087 566.1.1.0 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.77 71.0 4.86e-01 100.0% 32.2%
2522010 566.1.1.0 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.67 59.0 4.04e-01 99.0% 28.5%
3964144 1079.1.1.9 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Cad 0.64 48.0 3.87e-01 80.8% 93.1%
3279303 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 38.0 2.80e-01 99.0% 23.5%
4939077 1079.1.1.0 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.59 44.0 3.56e-01 81.8% 94.9%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 39.0 4.28e-01 98.0% 85.0%
3878750 109.4.1.153 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCF 0.58 37.0 3.08e-01 96.0% 34.4%
4600685 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.56 41.0 3.72e-01 77.8% 81.4%
5078120 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.56 37.0 4.17e-01 96.0% 94.3%
5066642 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.56 37.0 4.15e-01 96.0% 94.3%
5051840 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.55 35.0 3.78e-01 99.0% 75.3%
5050730 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.54 41.0 3.11e-01 80.8% 52.1%
4273747 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 38.0 3.35e-01 96.0% 50.0%
3490900 108.1.1.132 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7, EF-hand_8 0.53 36.0 3.03e-01 70.7% 98.3%
3267787 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.53 39.0 3.93e-01 86.9% 77.0%
3947260 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 40.0 3.39e-01 84.8% 93.5%
3599224 610.1.1.0 ↗ alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like 0.52 40.0 4.15e-01 83.8% 94.7%
3930816 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.51 38.0 2.80e-01 80.8% 96.4%
4979755 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.50 38.0 2.92e-01 81.8% 49.8%