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hypothetical_protein_1

Euk-Vir

Hubei_tombus-like_virus_4

hypothetical_protein_1__YP_009336488__Hubei_tombus-like_virus_4__1923288

Identity

Accession:
YP_009336488 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

65.5 mean pLDDT

Taxonomy

Hubei_tombus-like_virus_4

TaxID: 1923288

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-168
PDB
Domain cluster: rep: replicase__YP_009037607__Moroccan_pepper_virus__208086__D159-283
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08500.17 best Tombus_P33 101.3 7.90e-29 100.0% 66.7%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tt5B02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.62 41.0 4.88e-01 84.1% 98.7%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 38.0 4.16e-01 97.3% 74.5%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 35.0 3.79e-01 74.3% 67.0%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 39.0 3.81e-01 75.2% 58.9%
4ii2A02 3.40.50.12550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 0.59 50.0 4.01e-01 91.2% 53.9%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.58 44.0 4.72e-01 90.3% 91.8%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 42.0 4.27e-01 78.8% 95.5%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 39.0 3.89e-01 71.7% 95.7%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.55 38.0 4.20e-01 91.2% 90.7%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.55 33.0 3.40e-01 74.3% 61.7%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 41.0 4.02e-01 78.8% 93.4%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 35.0 3.76e-01 77.9% 76.8%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 43.0 3.34e-01 90.3% 88.6%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.52 35.0 3.81e-01 71.7% 84.6%
2gkmA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 37.0 3.62e-01 77.0% 98.4%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 34.0 3.93e-01 88.5% 100.0%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 42.0 3.13e-01 92.9% 46.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4580730 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.79 43.0 5.67e-01 70.8% 100.0%
4489939 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.79 42.0 5.67e-01 70.8% 100.0%
1211456 610.3.1.2 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R2,tRNA_synt_1c_R1 0.66 46.0 3.86e-01 71.7% 52.7%
3530124 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 36.0 4.16e-01 74.3% 76.2%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.64 38.0 4.53e-01 89.4% 89.3%
3238428 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.63 40.0 4.59e-01 77.0% 90.0%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.62 43.0 4.98e-01 72.6% 100.0%
3170802 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.61 42.0 4.57e-01 95.6% 85.3%
3171699 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.61 44.0 4.64e-01 99.1% 85.0%
3345966 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.60 34.0 4.01e-01 72.6% 81.3%
5073264 7577.1.1.4 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC 0.60 38.0 2.62e-01 74.3% 17.3%
3228837 109.12.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 0.59 32.0 3.83e-01 72.6% 78.7%
3967708 179.1.1.1 ↗ alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.57 38.0 4.19e-01 89.4% 86.7%
1694870 3996.1.1.0 ↗ alpha complex topology › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain 0.56 46.0 4.78e-01 98.2% 99.0%
4392521 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.56 43.0 3.22e-01 82.3% 48.6%
3423046 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.56 36.0 4.22e-01 96.5% 98.7%
3268 106.1.1.3 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin 0.56 39.0 3.89e-01 71.7% 95.7%
3602034 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 41.0 3.28e-01 78.8% 72.2%
3588178 5067.1.1.22 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › 7TMR-HDED 0.55 43.0 3.89e-01 99.1% 61.3%
3416186 3855.1.1.2 ↗ alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › DM4_12 0.54 43.0 4.11e-01 86.7% 76.9%
4165534 235.1.1.5 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly 0.53 38.0 3.02e-01 74.3% 84.0%
4026529 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.52 44.0 3.25e-01 94.7% 34.9%
3501219 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.51 37.0 3.84e-01 78.8% 81.0%
3712740 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.39e-01 98.2% 56.8%
4019596 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 40.0 3.40e-01 85.8% 99.0%
3901917 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.50 31.0 3.82e-01 72.6% 100.0%
3941318 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 3.75e-01 85.8% 77.1%