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hypothetical_protein_1

Euk-Vir

Beihai_tombus-like_virus_19

hypothetical_protein_1__YP_009336497__Beihai_tombus-like_virus_19__1922722

Identity

Accession:
YP_009336497 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

47.2 mean pLDDT

Taxonomy

TaxID: 1922722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-99
PDB
D2 medium residues 228-286
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.80 56.0 6.15e-01 91.5% 95.6%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.78 61.0 5.46e-01 94.9% 60.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.74 53.0 4.40e-01 74.6% 46.0%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.68 54.0 4.18e-01 89.8% 92.0%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.65 51.0 4.90e-01 86.4% 89.7%
4bkxA01 4.10.1240.50 Few Secondary Structures › Irregular › Hormone receptor fold › 0.64 52.0 4.20e-01 93.2% 46.9%
2r6fA02 1.20.1580.10 Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain 0.63 46.0 3.55e-01 83.1% 92.3%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.60 44.0 3.92e-01 81.4% 56.5%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 4.39e-01 74.6% 78.6%
3l4aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 43.0 3.42e-01 89.8% 37.2%
3piwA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 42.0 3.07e-01 72.9% 94.2%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 52.0 4.87e-01 100.0% 79.5%
7zs9F01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.59 48.0 4.04e-01 89.8% 68.0%
6n59A01 3.10.20.740 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 42.0 3.42e-01 79.7% 91.0%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.56 46.0 4.75e-01 89.8% 96.4%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.55 41.0 4.01e-01 86.4% 73.8%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 43.0 3.26e-01 88.1% 68.9%
2olnA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 2.92e-01 86.4% 65.3%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.53 39.0 3.57e-01 79.7% 70.4%
7xv3R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 42.0 2.81e-01 91.5% 21.0%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 37.0 3.67e-01 89.8% 69.7%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.83e-01 88.1% 73.1%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.51 40.0 3.89e-01 83.1% 75.4%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 40.0 2.86e-01 89.8% 53.6%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.51 41.0 3.62e-01 98.3% 92.9%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.51 41.0 2.60e-01 100.0% 40.3%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.50 40.0 3.23e-01 98.3% 46.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935681 3664.1.1.0 alpha arrays › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C 0.80 64.0 6.89e-01 86.4% 100.0%
5037319 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 55.0 3.55e-01 86.4% 34.4%
3650339 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 58.0 4.91e-01 96.6% 84.0%
3910609 101.1.1.53 alpha arrays › HTH › HTH › Three-helical HTH › BEN 0.67 53.0 4.28e-01 98.3% 43.2%
3185685 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.35e-01 98.3% 48.1%
3625454 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.63 51.0 4.20e-01 91.5% 84.5%
3489683 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.63 48.0 4.50e-01 86.4% 68.0%
3331967 397.7.1.3 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 0.61 47.0 5.03e-01 89.8% 100.0%
3452881 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 40.0 3.81e-01 76.3% 55.7%
3792063 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.61 42.0 3.35e-01 72.9% 36.8%
3403227 192.8.1.465 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 0.60 50.0 4.08e-01 93.2% 82.7%
3471182 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 41.0 2.55e-01 71.2% 13.3%
4023307 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.59 46.0 4.29e-01 84.7% 69.3%
4946274 152.1.1.0 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 0.59 49.0 4.40e-01 89.8% 86.3%
4931079 1045.1.1.0 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.58 39.0 3.84e-01 74.6% 64.6%
4172185 221.1.1.169 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › NADH-G_4Fe-4S_3, Fer2_4 0.56 43.0 3.38e-01 84.7% 92.3%
3514607 3226.1.1.3 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp 0.56 44.0 2.89e-01 93.2% 20.3%
3838594 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.55 43.0 3.43e-01 88.1% 40.0%
3319843 372.2.1.1 a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU 0.55 45.0 3.33e-01 94.9% 45.0%
3901765 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 44.0 3.91e-01 93.2% 76.5%
3605845 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 40.0 3.03e-01 89.8% 62.9%
3214996 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.50e-01 81.4% 37.7%
D3 medium residues 458-560
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19223.6 best Chropara_Vmeth 73.3 2.80e-20 100.0% 33.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.72 53.0 5.22e-01 76.7% 76.1%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.66 44.0 4.90e-01 71.8% 87.7%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.65 57.0 4.66e-01 95.1% 59.7%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 45.0 4.18e-01 77.7% 94.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.59 42.0 4.63e-01 72.8% 98.7%
3h9pA00 1.10.4200.10 Mainly Alpha › Orthogonal Bundle › Triphosphoribosyl-dephospho-CoA protein › Triphosphoribosyl-dephospho-CoA protein 0.59 50.0 3.90e-01 93.2% 73.9%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 41.0 3.85e-01 76.7% 94.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.55 38.0 4.01e-01 78.6% 79.8%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.50e-01 91.3% 97.7%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.53 35.0 3.83e-01 70.9% 84.8%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 40.0 3.72e-01 84.5% 63.4%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 4.16e-01 91.3% 83.6%
1gpjA01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.52 36.0 3.26e-01 71.8% 100.0%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 38.0 3.49e-01 76.7% 65.4%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.52 37.0 3.73e-01 75.7% 78.1%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.51 34.0 3.43e-01 76.7% 65.4%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.92e-01 90.3% 86.6%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 32.0 3.15e-01 78.6% 57.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.58e-01 86.4% 100.0%
7vyjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.23e-01 82.5% 48.9%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.50 37.0 4.11e-01 76.7% 98.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.69 42.0 4.81e-01 85.4% 84.0%
4287075 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 50.0 5.31e-01 78.6% 88.9%
5001242 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.65 48.0 4.27e-01 77.7% 95.9%
4633929 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.64 47.0 5.04e-01 77.7% 93.3%
4429233 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.64 48.0 5.18e-01 80.6% 96.5%
3506491 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.64 49.0 4.96e-01 81.6% 90.0%
4589278 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 45.0 4.51e-01 76.7% 72.4%
3668680 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.62 43.0 4.41e-01 72.8% 98.0%
4559208 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.59 44.0 3.67e-01 78.6% 48.0%
4168740 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.58 46.0 3.87e-01 85.4% 51.7%
4929833 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.57 37.0 3.96e-01 72.8% 75.6%
5039471 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.57 40.0 4.24e-01 73.8% 90.0%
4296658 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.56 40.0 4.09e-01 73.8% 83.7%
4935457 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.54 46.0 4.00e-01 94.2% 82.4%
3264516 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.54 46.0 3.36e-01 97.1% 94.9%
3929347 7579.1.1.70 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.53 40.0 2.91e-01 82.5% 58.4%
4249312 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.52 43.0 3.76e-01 92.2% 84.4%
3227860 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.51 39.0 2.62e-01 79.6% 55.8%
5060007 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 43.0 3.98e-01 96.1% 77.0%
3495293 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.50 42.0 3.90e-01 96.1% 97.1%
D4 medium residues 561-619
PDB