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hypothetical_protein_1
Euk-VirHubei_tombus-like_virus_33
hypothetical_protein_1__YP_009336573__Hubei_tombus-like_virus_33__1923281
Identity
- Accession:
- YP_009336573 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
51.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 465-758
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009508056__Heterobasidion_partitivirus_15__1469908__D97-135_228-464
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 29.4 | 5.00e-07 | 88.1% | 30.7% |
| PF02123.22 | RdRP_4 | 23.9 | 2.60e-05 | 60.5% | 14.2% |
| PF00680.26 | RdRP_1 | 26.5 | 3.80e-06 | 57.8% | 28.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.76 | 73.0 | 5.92e-01 | 100.0% | 68.8% |
| 2wmcA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.62 | 28.0 | 3.57e-01 | 100.0% | 69.5% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 35.0 | 4.44e-01 | 98.0% | 92.1% |
| 5abxA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.61 | 28.0 | 3.57e-01 | 100.0% | 71.7% |
| 3hxiA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.60 | 28.0 | 3.61e-01 | 100.0% | 73.1% |
| 3breA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 30.0 | 3.72e-01 | 96.3% | 74.7% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.50 | 25.0 | 3.33e-01 | 73.1% | 88.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5366 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.79 | 76.0 | 6.75e-01 | 100.0% | 74.9% |
| 2994348 | 304.48.1.9 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N | 0.77 | 74.0 | 5.00e-01 | 100.0% | 35.2% |
| 5364 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.76 | 73.0 | 6.58e-01 | 100.0% | 77.5% |
| 1586993 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.73 | 71.0 | 5.79e-01 | 100.0% | 68.2% |
| 3753267 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 69.0 | 5.98e-01 | 100.0% | 70.6% |
| 3877925 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 69.0 | 6.26e-01 | 100.0% | 79.0% |
| 3766919 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.73 | 69.0 | 5.12e-01 | 100.0% | 43.9% |
| 3753579 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 69.0 | 5.56e-01 | 100.0% | 57.4% |
| 3789227 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 68.0 | 6.69e-01 | 99.0% | 96.5% |
| 3899435 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 68.0 | 5.87e-01 | 100.0% | 68.8% |
| 4108146 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 66.0 | 6.21e-01 | 96.9% | 81.4% |
| 3173834 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 66.0 | 5.79e-01 | 98.3% | 78.0% |
| 4461237 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.69 | 65.0 | 5.28e-01 | 98.6% | 64.9% |
| 4663932 | 304.48.1.14 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF | 0.66 | 31.0 | 4.05e-01 | 97.6% | 77.1% |
| 3645796 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.61 | 54.0 | 5.37e-01 | 97.3% | 89.7% |
| 4170997 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.61 | 42.0 | 4.88e-01 | 72.1% | 97.1% |
| 3574195 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.60 | 26.0 | 3.75e-01 | 97.6% | 86.2% |
| 4666185 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.60 | 54.0 | 4.78e-01 | 96.9% | 67.2% |
| 4241274 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.59 | 54.0 | 4.75e-01 | 100.0% | 67.1% |
| 3745715 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.51 | 25.0 | 3.15e-01 | 73.8% | 76.5% |
D2
high
residues 785-911