←Back to structures
hypothetical_protein_1
Euk-VirHubei_odonate_virus_12
hypothetical_protein_1__YP_009336720__Hubei_odonate_virus_12__1922993
Identity
- Accession:
- YP_009336720 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
49.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 150-206_265-387
Domain cluster:
rep: hypothetical_protein_AACVs1_gp2__YP_009011226__Anopheline-associated_C_virus_Viruses.__X__D149-168_223-340
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19223.6 best | Chropara_Vmeth | 177.5 | 5.10e-52 | 70.0% | 38.4% |
D2
medium
residues 11-147
D3
medium
residues 388-494
Domain cluster:
rep: hypothetical_protein_1__YP_009337802__Hubei_tombus-like_virus_43__1923291__D506-598
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19223.6 best | Chropara_Vmeth | 74.1 | 1.60e-20 | 100.0% | 31.8% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.93e-01 | 81.3% | 97.7% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.59 | 45.0 | 3.81e-01 | 80.4% | 89.5% |
| 1ex0B02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.59 | 45.0 | 3.20e-01 | 80.4% | 40.6% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 39.0 | 4.01e-01 | 92.5% | 70.6% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 47.0 | 4.54e-01 | 87.9% | 97.5% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 26.0 | 3.15e-01 | 86.9% | 65.2% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 34.0 | 4.14e-01 | 89.7% | 100.0% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.55 | 36.0 | 4.18e-01 | 81.3% | 93.4% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.78e-01 | 81.3% | 93.8% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.53 | 37.0 | 3.74e-01 | 82.2% | 72.0% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.52 | 37.0 | 3.05e-01 | 74.8% | 56.4% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.79e-01 | 86.0% | 100.0% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.51 | 29.0 | 2.90e-01 | 73.8% | 52.2% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.51 | 41.0 | 4.22e-01 | 87.9% | 91.3% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 39.0 | 3.57e-01 | 83.2% | 100.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.68 | 41.0 | 5.23e-01 | 72.0% | 100.0% |
| 5001101 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.66 | 33.0 | 4.27e-01 | 78.5% | 85.0% |
| 5052666 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.64 | 41.0 | 4.36e-01 | 91.6% | 73.4% |
| 5036736 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.64 | 40.0 | 4.43e-01 | 71.0% | 78.8% |
| 4969523 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.63 | 29.0 | 3.88e-01 | 70.1% | 83.3% |
| 4314504 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 51.0 | 4.75e-01 | 87.9% | 88.1% |
| 4966836 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 32.0 | 4.28e-01 | 78.5% | 100.0% |
| 4259660 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.60 | 41.0 | 3.10e-01 | 70.1% | 75.6% |
| 3480221 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 24.0 | 3.17e-01 | 85.0% | 66.2% |
| 4934380 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.59 | 42.0 | 3.28e-01 | 73.8% | 65.0% |
| 4929833 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.58 | 38.0 | 4.09e-01 | 80.4% | 77.8% |
| 3974425 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.58 | 36.0 | 3.85e-01 | 87.9% | 70.5% |
| 5042713 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.57 | 38.0 | 4.19e-01 | 70.1% | 84.7% |
| 4947050 | 206.1.1.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo | 0.57 | 40.0 | 3.19e-01 | 72.9% | 67.1% |
| 4600223 | 616.1.1.33 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › UPF0262 | 0.57 | 44.0 | 4.03e-01 | 84.1% | 97.2% |
| 5023930 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 31.0 | 3.45e-01 | 72.9% | 65.9% |
| 5044994 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.57 | 37.0 | 4.01e-01 | 72.0% | 81.2% |
| 4998230 | 206.1.1.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo | 0.56 | 40.0 | 3.18e-01 | 72.9% | 67.3% |
| 2643652 | 640.1.1.1 ↗ | alpha arrays › Methane monooxygenase hydrolase gamma subunit-like › Methane monooxygenase hydrolase gamma subunit › Methane monooxygenase hydrolase gamma subunit › MeMO_Hyd_G | 0.56 | 36.0 | 3.11e-01 | 72.9% | 41.1% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 36.0 | 4.28e-01 | 86.0% | 98.6% |
| 3370663 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.55 | 27.0 | 3.52e-01 | 80.4% | 81.4% |
| 3839277 | 241.16.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD | 0.55 | 38.0 | 3.47e-01 | 71.0% | 93.8% |
| 3387446 | 7579.1.1.60 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF2920 | 0.55 | 38.0 | 2.58e-01 | 72.0% | 43.1% |
| 4976317 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.54 | 35.0 | 2.89e-01 | 76.6% | 32.9% |
| 4642895 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 33.0 | 3.08e-01 | 80.4% | 50.8% |
| 5014319 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 32.0 | 3.93e-01 | 72.9% | 94.1% |
| 4864637 | 7008.1.1.1 ↗ | alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.52 | 42.0 | 3.90e-01 | 86.9% | 83.0% |
| 4600569 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.52 | 38.0 | 2.87e-01 | 76.6% | 31.2% |
| 4927889 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.52 | 27.0 | 3.24e-01 | 84.1% | 73.3% |
| 3784839 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 30.0 | 3.15e-01 | 93.5% | 62.0% |
| 5011074 | 1111.1.1.8 ↗ | alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › DUF2070 | 0.51 | 36.0 | 3.13e-01 | 73.8% | 46.4% |
| 3323191 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 29.0 | 3.44e-01 | 100.0% | 81.3% |
D4
medium
residues 495-549