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hypothetical_protein_1

Euk-Vir

Hubei_unio_douglasiae_virus_3

hypothetical_protein_1__YP_009336723__Hubei_unio_douglasiae_virus_3__1923323

Identity

Accession:
YP_009336723 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

50.9 mean pLDDT

Taxonomy

TaxID: 1923323

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 148-179_215-246_281-328
PDB
D2 medium residues 329-387
PDB
D3 medium residues 512-558_574-619_650-738
PDB
D4 medium residues 620-649_739-799
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cqgA04 3.30.70.2630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 59.0 5.60e-01 100.0% 94.3%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.64 41.0 4.60e-01 85.7% 84.5%
1ayeA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.63 51.0 4.95e-01 84.6% 88.9%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.63 50.0 5.04e-01 83.5% 92.3%
3d68A01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.61 48.0 4.83e-01 83.5% 94.6%
2hg4D03 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.60 47.0 3.24e-01 83.5% 40.4%
1kwmA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.59 45.0 4.57e-01 80.2% 98.9%
4gvbA00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.58 41.0 4.37e-01 72.5% 92.2%
3kizA02 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.57 49.0 3.69e-01 94.5% 97.3%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 32.0 3.02e-01 85.7% 46.7%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.56 38.0 4.28e-01 72.5% 92.8%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.55 36.0 3.40e-01 87.9% 54.6%
3viuA04 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.55 49.0 3.98e-01 98.9% 91.3%
4ammA00 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.54 47.0 3.09e-01 95.6% 39.6%
6fijA02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.53 46.0 3.19e-01 95.6% 49.2%
7veeA02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.52 44.0 3.07e-01 95.6% 48.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404332 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.67 49.0 4.92e-01 74.7% 87.8%
4928686 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 45.0 4.57e-01 70.3% 100.0%
3897392 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.65 48.0 4.83e-01 75.8% 92.2%
3624999 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.65 48.0 4.84e-01 75.8% 92.2%
4329557 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 49.0 4.96e-01 78.0% 93.3%
4548012 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 48.0 4.95e-01 76.9% 98.8%
5054369 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 47.0 5.17e-01 76.9% 97.3%
4250299 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 46.0 4.40e-01 74.7% 93.3%
4227861 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.64 45.0 4.87e-01 72.5% 100.0%
3901955 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.64 46.0 4.68e-01 75.8% 96.7%
4589829 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 47.0 4.82e-01 78.0% 98.9%
3794588 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.63 48.0 4.76e-01 79.1% 88.4%
5227 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.63 50.0 5.02e-01 83.5% 91.3%
5054705 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.63 46.0 4.89e-01 75.8% 93.8%
4202472 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.63 44.0 5.00e-01 72.5% 100.0%
1843000 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.63 49.0 4.87e-01 81.3% 93.5%
3863211 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.63 46.0 4.55e-01 75.8% 88.4%
3394715 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.62 50.0 5.17e-01 85.7% 97.6%
3851083 376.1.6.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.62 32.0 4.01e-01 75.8% 88.0%
2794526 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.62 47.0 5.05e-01 80.2% 97.5%
3404929 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.62 50.0 5.10e-01 86.8% 93.3%
5062191 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.62 44.0 4.85e-01 78.0% 91.9%
3216595 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.61 46.0 4.67e-01 79.1% 90.0%
3392736 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.61 48.0 4.95e-01 82.4% 97.6%
5030717 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.61 47.0 4.99e-01 80.2% 100.0%
5032235 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.61 46.0 4.81e-01 79.1% 98.8%
5228 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.61 45.0 4.51e-01 79.1% 93.7%
4929155 304.111.1.1 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.60 53.0 4.19e-01 93.4% 90.9%
3522312 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.60 34.0 4.17e-01 76.9% 90.9%
3403404 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.60 48.0 5.11e-01 84.6% 100.0%
3890373 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.60 33.0 4.19e-01 71.4% 98.0%
1920459 2007.1.19.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 0.59 46.0 3.09e-01 83.5% 35.6%
5054343 304.111.1.1 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.59 51.0 4.04e-01 93.4% 87.8%
3593586 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 42.0 4.50e-01 75.8% 95.0%
4052531 304.111.1.1 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.59 51.0 4.06e-01 93.4% 89.1%
5011383 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.58 38.0 4.48e-01 78.0% 100.0%
3229366 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.57 35.0 4.18e-01 92.3% 100.0%
3500001 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.57 35.0 4.07e-01 87.9% 91.7%
4419886 304.111.1.1 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.57 49.0 3.97e-01 93.4% 89.3%
3521427 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.57 44.0 4.36e-01 82.4% 92.6%
4576277 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.55 38.0 4.21e-01 73.6% 92.9%
5293 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.54 37.0 4.19e-01 71.4% 94.1%
5077094 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.53 46.0 4.66e-01 97.8% 97.8%
4264423 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.53 40.0 3.70e-01 80.2% 76.5%
3838274 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 35.0 3.44e-01 71.4% 99.0%
4985012 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.51 40.0 3.74e-01 83.5% 80.5%
D5 medium residues 800-850
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8c4aA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.74 65.0 3.74e-01 98.0% 12.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 49.0 4.70e-01 70.6% 69.0%
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.72 60.0 5.94e-01 100.0% 92.5%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 62.0 5.18e-01 100.0% 67.8%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.71 58.0 4.33e-01 96.1% 46.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.65 54.0 4.88e-01 96.1% 76.1%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.63 44.0 3.33e-01 72.5% 35.5%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 3.75e-01 96.1% 45.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.61 48.0 4.31e-01 92.2% 83.3%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.58 45.0 4.39e-01 96.1% 95.2%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.57 43.0 3.92e-01 94.1% 65.4%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.56 44.0 3.32e-01 90.2% 45.4%
1kf6C00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.56 38.0 2.96e-01 74.5% 42.3%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.55 45.0 3.86e-01 100.0% 67.0%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 41.0 3.93e-01 92.2% 83.8%
1h1oA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 45.0 3.89e-01 96.1% 83.3%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 44.0 4.13e-01 100.0% 82.1%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.59e-01 96.1% 60.0%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.50 39.0 3.53e-01 86.3% 98.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947564 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.87 59.0 5.38e-01 70.6% 58.5%
4930182 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.82 58.0 3.80e-01 74.5% 49.2%
3436926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 52.0 4.65e-01 72.5% 55.4%
3379402 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.76 64.0 3.57e-01 96.1% 8.2%
3775580 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.76 51.0 4.50e-01 70.6% 56.0%
3321805 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 59.0 3.73e-01 100.0% 16.6%
3593308 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 61.0 3.45e-01 100.0% 15.4%
3740106 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 57.0 4.52e-01 100.0% 73.9%
3274546 7516.1.1.79 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.63 51.0 2.91e-01 92.2% 92.2%
4086475 3755.3.1.466 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC 0.63 49.0 3.59e-01 90.2% 69.7%
4937014 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 51.0 3.10e-01 100.0% 13.9%
3219669 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.58 49.0 4.96e-01 96.1% 96.0%
5000777 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 44.0 3.61e-01 84.3% 46.8%
3164806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.90e-01 74.5% 98.0%
4593927 6096.1.1.1 a+b two layers › Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB › Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB › Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB › DUF3410 0.54 44.0 3.64e-01 98.0% 77.0%