hypothetical_protein_1

Euk-Vir

Hubei_tombus-like_virus_10

hypothetical_protein_1__YP_009336773__Hubei_tombus-like_virus_10__1923256

Identity

84.2 mean pLDDT

Hubei_tombus-like_virus_10

TaxID: 1923256

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 363-515

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	71.3	9.70e-20	96.1%	27.8%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	39.0	4.32e-01	83.7%	85.5%
3ecsC01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.57	30.0	3.55e-01	99.3%	75.0%
2cwyA00	1.10.3450.10	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like	0.56	32.0	4.12e-01	85.0%	95.7%
2ckwA04	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.55	34.0	3.97e-01	70.6%	88.8%
4mmhA01	1.50.10.100	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase	0.52	37.0	2.83e-01	72.5%	78.6%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.52	31.0	3.48e-01	96.1%	77.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3010831	4967.1.1.14 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb	0.60	54.0	4.85e-01	96.7%	77.6%
5005610	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.59	31.0	3.79e-01	86.9%	77.8%
3696580	2003.1.1.58 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4	0.55	49.0	3.58e-01	99.3%	56.7%
3397977	109.25.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A	0.51	35.0	3.90e-01	86.9%	91.3%
3907391	109.25.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A	0.50	33.0	3.82e-01	82.4%	93.6%

D2 medium residues 36-72_128-156_258-273

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009336894__Beihai_tombus-like_virus_10__1922713__D560-591_654-678_782-796

D3 medium residues 73-127_157-187_225-257_274-289

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hkuB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	37.0	3.48e-01	74.1%	71.1%
4pt1B00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.52	36.0	3.69e-01	83.0%	74.2%

D4 medium residues 188-224_290-362

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	45.8	5.50e-12	64.5%	13.8%