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hypothetical_protein_1

Euk-Vir

Beihai_sobemo-like_virus_25

hypothetical_protein_1__YP_009336811__Beihai_sobemo-like_virus_25__1922697

Identity

Accession:
YP_009336811 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

82.9 mean pLDDT

Taxonomy

TaxID: 1922697

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 110-135_161-307_362-446
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uekA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.53 24.0 3.40e-01 94.6% 89.2%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.51 25.0 3.34e-01 95.0% 85.9%
4hacA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.51 26.0 3.50e-01 93.8% 94.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5367 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.86 83.0 7.13e-01 100.0% 96.3%
1875037 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.86 83.0 7.05e-01 100.0% 95.3%
None 0.84 82.0 7.08e-01 100.0% 94.3%
5364 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.84 81.0 6.92e-01 100.0% 94.0%
1173784 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.84 81.0 7.01e-01 100.0% 94.6%
2541763 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.83 80.0 6.88e-01 100.0% 95.7%
5366 304.48.1.15 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.80 76.0 6.45e-01 100.0% 82.2%
1789314 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.77 74.0 6.26e-01 100.0% 93.1%
217141 304.48.1.15 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.76 73.0 6.40e-01 100.0% 93.0%
4152428 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 63.0 5.57e-01 89.9% 76.9%
4108146 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 62.0 5.60e-01 89.9% 81.4%
3173834 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 62.0 5.24e-01 89.9% 75.4%
4871000 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.71 54.0 5.40e-01 77.1% 89.8%
3598902 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 61.0 5.32e-01 89.9% 94.2%
223786 304.48.1.16 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_4 0.71 67.0 6.12e-01 98.8% 100.0%
4361688 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.71 67.0 5.82e-01 100.0% 88.3%
3250871 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 40.0 5.15e-01 78.3% 99.3%
3691350 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.67 59.0 5.80e-01 90.3% 100.0%
3997418 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 59.0 5.37e-01 100.0% 82.4%
4019237 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.58 46.0 4.83e-01 99.6% 89.8%
3483524 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 54.0 5.06e-01 100.0% 88.5%
4122730 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.56 25.0 3.51e-01 95.0% 85.8%
3945698 283.2.1.10 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29514 0.55 14.0 2.26e-01 72.9% 53.8%
5001989 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.54 24.0 3.54e-01 95.0% 91.3%
4038671 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.54 24.0 3.43e-01 95.0% 88.7%
3193439 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 49.0 4.68e-01 98.1% 88.3%
4118156 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.52 26.0 3.34e-01 93.4% 80.7%
5039606 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.52 23.0 3.27e-01 94.6% 85.6%
4946980 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.52 27.0 3.55e-01 95.0% 89.3%
4933627 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 27.0 3.37e-01 93.8% 81.3%
4951235 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.50 26.0 3.42e-01 94.6% 88.6%
5026667 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.50 27.0 3.37e-01 94.6% 84.6%
D2 medium residues 136-160_308-361
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 43.0 3.80e-01 91.1% 48.7%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.62 46.0 4.19e-01 79.7% 100.0%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.59 43.0 3.74e-01 77.2% 74.4%
3fhnA01 6.10.280.210 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A 0.59 40.0 3.08e-01 70.9% 42.4%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.58 50.0 4.25e-01 93.7% 84.0%
3sqnA03 1.10.1790.30 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.53 40.0 3.54e-01 81.0% 89.0%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 40.0 3.58e-01 92.4% 58.4%
2vp8B00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.51 43.0 3.04e-01 91.1% 60.6%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.96e-01 88.6% 43.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575378 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 38.0 3.67e-01 72.2% 83.2%
3507646 247.1.1.10 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL,Lactamase_B_2 0.54 40.0 2.94e-01 79.7% 40.9%
3775098 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.51 40.0 2.55e-01 86.1% 43.3%
4887824 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.50 40.0 3.22e-01 86.1% 83.2%
D3 medium residues 471-548
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 54.0 4.83e-01 76.9% 98.1%
5dllA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.71 63.0 4.15e-01 100.0% 24.2%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.68 47.0 3.93e-01 70.5% 100.0%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 53.0 5.38e-01 87.2% 97.3%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 46.0 4.23e-01 74.4% 91.5%
1uw4B00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 4.03e-01 98.7% 41.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 48.0 4.89e-01 78.2% 92.0%
3t33A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 56.0 3.56e-01 100.0% 27.8%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.06e-01 75.6% 85.2%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 52.0 3.96e-01 100.0% 49.8%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 48.0 3.84e-01 83.3% 55.8%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.61 49.0 4.48e-01 87.2% 82.4%
1pmiA02 1.10.441.10 Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 0.60 41.0 3.47e-01 70.5% 80.1%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 51.0 3.97e-01 100.0% 81.3%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 47.0 3.78e-01 92.3% 83.8%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 45.0 3.79e-01 83.3% 72.7%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 44.0 3.77e-01 83.3% 91.0%
1nktA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 3.29e-01 98.7% 39.9%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 45.0 3.24e-01 93.6% 82.8%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.55 45.0 3.85e-01 87.2% 60.3%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 46.0 3.10e-01 98.7% 57.9%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.54 41.0 4.06e-01 79.5% 97.5%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.53 42.0 4.07e-01 88.5% 93.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 4.01e-01 84.6% 74.7%
2pz9A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 42.0 3.34e-01 89.7% 74.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 39.0 3.45e-01 82.1% 87.0%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.52 44.0 4.10e-01 100.0% 75.2%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 39.0 3.25e-01 82.1% 87.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4410196 2007.1.19.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.80 60.0 3.71e-01 78.2% 17.2%
4984330 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.72 54.0 5.14e-01 79.5% 71.1%
3929749 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 4.87e-01 100.0% 47.4%
3807750 186.2.1.1 alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.69 55.0 4.70e-01 85.9% 59.2%
3941363 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 4.33e-01 100.0% 48.4%
3935030 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 46.0 4.20e-01 70.5% 86.7%
3514434 109.4.1.405 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_HD2 0.68 60.0 3.71e-01 100.0% 38.1%
3250426 109.4.1.390 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 0.67 57.0 3.65e-01 96.2% 25.6%
4517375 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.65 46.0 4.15e-01 75.6% 86.4%
4873162 150.3.1.11 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › LIF_OSM 0.64 45.0 3.48e-01 73.1% 68.6%
3514684 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 45.0 4.05e-01 76.9% 86.1%
4120070 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 49.0 3.80e-01 83.3% 80.6%
3940780 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 46.0 4.30e-01 80.8% 94.0%
3953434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 48.0 3.66e-01 92.3% 75.6%
4928534 191.1.1.63 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.59 50.0 3.90e-01 97.4% 83.8%
4034363 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 40.0 3.59e-01 70.5% 88.2%
3956898 1075.1.1.38 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › FLQE3_permease 0.58 46.0 3.35e-01 88.5% 92.8%
3966180 191.1.1.8 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_33 0.56 42.0 3.51e-01 82.1% 71.7%