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hypothetical_protein_1

Euk-Vir

Shahe_tombus-like_virus_1

hypothetical_protein_1__YP_009336903__Shahe_tombus-like_virus_1__1923455

Identity

Accession:: YP_009336903 ↗
Protein ID:: hypothetical_protein_1
Kingdom:: euk

Quality

90.3 mean pLDDT

Taxonomy

Shahe_tombus-like_virus_1

TaxID: 1923455

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-9_334-486

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	90.3	1.70e-25	78.9%	26.5%

D2 medium residues 44-160

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333161__Hubei_tombus-like_virus_32__1923280__D105-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	118.7	4.30e-34	100.0%	24.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oarB00	1.10.1200.120	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1	0.52	31.0	3.04e-01	93.2%	53.6%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	26.0	2.71e-01	70.1%	47.7%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.74	68.0	4.76e-01	99.1%	37.0%
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.74	68.0	4.71e-01	100.0%	43.4%
None	—		0.74	67.0	4.71e-01	100.0%	70.5%
3768112	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.64	55.0	4.66e-01	95.7%	67.5%
3250871	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	47.0	4.33e-01	77.8%	74.0%
3691350	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.61	54.0	4.19e-01	100.0%	93.3%
4108146	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.60	46.0	3.31e-01	80.3%	64.9%
4019374	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.58	50.0	3.58e-01	100.0%	39.0%
3651623	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.57	50.0	3.94e-01	97.4%	53.5%
3680609	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.56	46.0	4.09e-01	88.0%	70.0%
3646867	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.56	44.0	4.14e-01	83.8%	89.7%
4361688	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.55	49.0	3.49e-01	100.0%	64.5%
3241316	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.55	49.0	3.57e-01	100.0%	70.4%
4507925	7579.1.1.263 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF3141	0.52	45.0	3.03e-01	100.0%	67.5%

D3 medium residues 161-200_265-333

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	78.0	9.30e-22	64.2%	14.4%
PF00998.29	RdRP_3	48.6	7.40e-13	40.4%	8.2%

D4 medium residues 201-264

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337657__Changjiang_tombus-like_virus_11__1922804__D27-99

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	88.9	4.60e-25	100.0%	13.4%