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hypothetical_protein_1

Euk-Vir

Beihai_sobemo-like_virus_3

hypothetical_protein_1__YP_009336957__Beihai_sobemo-like_virus_3__1922700

Identity

Accession:
YP_009336957 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

69.8 mean pLDDT

Taxonomy

Beihai_sobemo-like_virus_3

TaxID: 1922700

Cluster

View cluster (38 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-339
PDB
Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 39.0 5.70e-01 100.0% 94.1%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 40.0 5.87e-01 98.6% 98.0%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 32.0 4.94e-01 89.9% 93.2%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 73.0 6.99e-01 99.5% 95.2%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 68.0 6.95e-01 99.0% 96.1%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 38.0 5.00e-01 99.0% 86.7%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 38.0 5.26e-01 95.2% 96.3%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 38.0 5.28e-01 94.7% 98.1%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 39.0 5.40e-01 95.2% 100.0%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 36.0 5.09e-01 94.2% 99.0%
1elvA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 34.0 5.04e-01 93.2% 100.0%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 37.0 5.18e-01 95.2% 100.0%
3govB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 38.0 4.97e-01 95.2% 99.2%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 4.83e-01 93.7% 97.8%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 4.82e-01 93.7% 97.8%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 29.0 3.42e-01 76.8% 74.8%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 28.0 3.26e-01 77.8% 72.1%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.84 72.0 7.63e-01 99.5% 98.9%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 61.0 6.91e-01 94.7% 96.3%
3630080 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 77.0 6.52e-01 100.0% 90.5%
3407173 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 77.0 7.20e-01 100.0% 95.2%
3401816 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 76.0 7.13e-01 100.0% 96.3%
3940846 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.79 75.0 6.91e-01 100.0% 97.3%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 71.0 6.98e-01 98.6% 88.6%
4005257 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 75.0 7.08e-01 99.5% 96.6%
3945667 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 74.0 7.01e-01 99.5% 94.7%
3879232 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 73.0 6.47e-01 97.6% 98.6%
3772106 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 71.0 6.89e-01 98.1% 87.1%
3390983 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 75.0 6.89e-01 100.0% 93.7%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 69.0 7.07e-01 98.6% 95.0%
3225260 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.78 74.0 6.76e-01 100.0% 90.9%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 70.0 6.90e-01 96.6% 89.3%
3397934 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 74.0 6.67e-01 100.0% 91.4%
3899289 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 73.0 6.47e-01 98.6% 91.1%
3399384 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 73.0 6.78e-01 100.0% 94.5%
2868330 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.77 73.0 6.91e-01 99.5% 96.2%
3218403 1.1.5.73 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin, DUF316 0.77 73.0 6.40e-01 100.0% 93.9%
3392873 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 74.0 7.15e-01 100.0% 97.3%
3246192 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.77 73.0 6.52e-01 100.0% 91.1%
3525486 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 72.0 6.98e-01 99.5% 95.2%
3226622 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.77 73.0 6.27e-01 100.0% 89.8%
5051302 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 73.0 7.08e-01 100.0% 95.6%
3394133 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 73.0 7.10e-01 100.0% 97.8%
1063651 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 72.0 6.80e-01 99.5% 96.7%
3213899 1.1.5.73 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin, DUF316 0.76 72.0 6.40e-01 100.0% 92.3%
3989070 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 72.0 7.14e-01 100.0% 100.0%
3452728 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.76 72.0 7.26e-01 99.5% 99.5%
3276425 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.76 71.0 6.24e-01 97.6% 90.3%
3505064 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.76 72.0 6.54e-01 100.0% 92.1%
3397710 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 70.0 6.61e-01 97.6% 90.6%
3409675 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 71.0 7.02e-01 100.0% 93.6%
3397664 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 72.0 6.73e-01 100.0% 97.6%
3913172 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 6.84e-01 100.0% 90.6%
3907134 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 71.0 6.98e-01 99.5% 94.1%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 70.0 6.82e-01 100.0% 89.3%
3515391 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 6.57e-01 99.0% 98.0%
3388883 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 6.67e-01 98.6% 93.8%
3505030 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 6.45e-01 98.6% 93.1%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.75 70.0 6.40e-01 99.0% 93.2%
3509860 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 70.0 6.34e-01 99.0% 87.4%
3504279 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.74 68.0 6.31e-01 96.6% 93.7%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.74 69.0 6.31e-01 97.6% 87.7%
3240335 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.74 69.0 6.30e-01 99.0% 89.2%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.74 69.0 6.19e-01 98.6% 90.6%
3512548 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 57.0 5.67e-01 79.7% 94.9%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.74 70.0 6.52e-01 99.5% 83.2%
3213725 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.73 69.0 6.24e-01 100.0% 90.9%
3229859 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.73 68.0 6.32e-01 98.6% 92.2%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 65.0 6.74e-01 96.6% 98.5%
3433009 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.73 69.0 6.40e-01 99.5% 82.7%
3546177 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 68.0 6.50e-01 98.6% 91.1%
3443528 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.73 69.0 6.86e-01 99.5% 98.6%
3502140 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 67.0 6.25e-01 97.6% 94.8%
376155 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.72 64.0 6.64e-01 97.6% 98.5%
3434538 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.72 69.0 6.81e-01 99.5% 98.6%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.72 64.0 5.57e-01 91.8% 94.8%
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.72 66.0 6.60e-01 97.6% 95.7%
3401129 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 66.0 6.35e-01 97.6% 97.0%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 67.0 6.28e-01 99.0% 90.8%
3393534 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 66.0 6.56e-01 97.6% 95.3%
1680525 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 67.0 6.60e-01 100.0% 99.5%
3816594 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 67.0 6.32e-01 98.6% 94.2%
3505835 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 67.0 6.19e-01 99.5% 93.3%
3503044 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 55.0 5.83e-01 81.6% 98.9%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 66.0 6.40e-01 100.0% 92.4%
3504295 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.67 49.0 5.54e-01 74.4% 100.0%
5019852 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 61.0 6.13e-01 98.6% 97.6%
3576746 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 53.0 5.65e-01 93.2% 97.8%
3516690 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.63 56.0 5.54e-01 94.2% 92.7%
3510207 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 53.0 5.52e-01 91.3% 97.9%
D2 medium residues 550-593_691-761
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jrnA01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 37.0 3.05e-01 100.0% 40.9%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.52 34.0 2.73e-01 100.0% 34.1%
5t0oA03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.51 30.0 3.20e-01 97.4% 65.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
145368 139.3.1.1 ↗ few secondary structure elements › Multiheme cytochromes › Photosynthetic reaction centre (cytochrome subunit) › Photosynthetic reaction centre (cytochrome subunit) › CytoC_RC 0.51 45.0 3.29e-01 100.0% 56.9%
D3 medium residues 633-659_762-818_898-910
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.52 40.0 3.39e-01 84.5% 67.8%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.52 35.0 3.19e-01 82.5% 50.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.78 72.0 4.77e-01 100.0% 67.5%
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.77 72.0 4.72e-01 100.0% 69.3%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.77 72.0 4.72e-01 100.0% 67.8%
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.75 69.0 4.54e-01 100.0% 69.3%
3691350 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.68 56.0 4.09e-01 90.7% 89.3%
217141 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.66 60.0 4.04e-01 100.0% 67.2%
D4 medium residues 660-690_819-897_911-941
PDB
Domain cluster: rep: NS5-like_protein__YP_009029999__Jingmen_tick_virus__1491393__D415-443_537-682
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.57 29.0 3.88e-01 72.3% 97.1%
1iqpA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.53 32.0 3.88e-01 78.0% 91.5%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 31.0 3.87e-01 91.5% 100.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4680911 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.51 30.0 3.09e-01 96.5% 57.9%
D5 medium residues 972-1055
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009336876__Beihai_sobemo-like_virus_4__1922701__D877-936