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hypothetical_protein_1
Euk-VirHubei_tombus-like_virus_2
hypothetical_protein_1__YP_009336966__Hubei_tombus-like_virus_2__1923266
Identity
- Accession:
- YP_009336966 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
56.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 64-120
D2
medium
residues 121-206
Domain cluster:
rep: hypothetical_protein_1__YP_009342274__Wenzhou_tombus-like_virus_3__1923673__D47-138
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 51.0 | 5.52e-01 | 72.1% | 83.3% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.70 | 53.0 | 5.12e-01 | 80.2% | 81.4% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 51.0 | 4.59e-01 | 77.9% | 62.0% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.69 | 49.0 | 4.88e-01 | 74.4% | 77.3% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.68 | 55.0 | 4.09e-01 | 87.2% | 58.1% |
| 3h2zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.67 | 51.0 | 4.00e-01 | 80.2% | 48.3% |
| 3doeB00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.65 | 48.0 | 4.42e-01 | 79.1% | 91.2% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.63 | 54.0 | 4.39e-01 | 96.5% | 84.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.50e-01 | 75.6% | 89.7% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 4.32e-01 | 70.9% | 73.5% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 41.0 | 3.93e-01 | 70.9% | 56.7% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.60 | 38.0 | 3.44e-01 | 70.9% | 44.7% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.59 | 44.0 | 4.09e-01 | 81.4% | 67.8% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.57 | 43.0 | 4.36e-01 | 94.2% | 83.1% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.20e-01 | 96.5% | 47.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4580730 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.76 | 50.0 | 5.84e-01 | 70.9% | 98.3% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.71 | 52.0 | 5.73e-01 | 77.9% | 97.1% |
| 5042713 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.69 | 48.0 | 4.92e-01 | 72.1% | 76.5% |
| 4929833 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.69 | 49.0 | 4.84e-01 | 75.6% | 70.0% |
| 5036736 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.69 | 48.0 | 4.88e-01 | 73.3% | 77.6% |
| 3170802 | 101.1.1.133 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 | 0.68 | 56.0 | 5.45e-01 | 91.9% | 98.9% |
| 5048577 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.64 | 48.0 | 5.01e-01 | 80.2% | 97.5% |
| 5019219 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.61 | 49.0 | 3.35e-01 | 86.0% | 57.0% |
| 4168740 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.60 | 42.0 | 3.36e-01 | 73.3% | 43.9% |
| 4994898 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.60 | 42.0 | 4.23e-01 | 73.3% | 77.6% |
| 4929259 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.59 | 50.0 | 3.34e-01 | 97.7% | 60.0% |
| 3250864 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.56 | 38.0 | 3.57e-01 | 70.9% | 65.5% |
| 142120 | 106.1.1.5 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK_N | 0.55 | 44.0 | 3.75e-01 | 90.7% | 57.5% |
| 4927512 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.53 | 37.0 | 3.70e-01 | 73.3% | 82.2% |
| 3316942 | 148.1.3.14 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC4_C | 0.52 | 39.0 | 3.67e-01 | 81.4% | 100.0% |
| 3781496 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.51e-01 | 76.7% | 98.3% |
| 3662533 | 603.1.1.138 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1 | 0.51 | 34.0 | 3.36e-01 | 91.9% | 63.3% |