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hypothetical_protein_1
Euk-VirChangjiang_tombus-like_virus_12
hypothetical_protein_1__YP_009337155__Changjiang_tombus-like_virus_12__1922805
Identity
- Accession:
- YP_009337155 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
83.3
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 351-472
Domain cluster:
rep: hypothetical_protein_3__YP_009333294__Sanxia_tombus-like_virus_7__1923391__D361-460
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 48.6 | 7.50e-13 | 98.4% | 25.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hr2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 39.0 | 3.61e-01 | 71.3% | 59.0% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 34.0 | 3.86e-01 | 91.8% | 85.1% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.52 | 33.0 | 3.29e-01 | 98.4% | 60.8% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 37.0 | 3.50e-01 | 75.4% | 87.7% |
| 5fhiA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 39.0 | 3.76e-01 | 82.8% | 79.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024032 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.56 | 39.0 | 3.65e-01 | 72.1% | 93.1% |
| 4984330 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.54 | 32.0 | 3.69e-01 | 95.1% | 80.0% |
| 4346256 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.51 | 41.0 | 3.63e-01 | 86.1% | 91.7% |
| 3977653 | 601.1.2.88 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MASE2 | 0.51 | 45.0 | 3.99e-01 | 99.2% | 72.2% |
D2
medium
residues 33-172_214-275
Domain cluster:
rep: hypothetical_protein_1__YP_009336562__Hubei_tombus-like_virus_9__1923296__D77-195_233-294
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 76.6 | 2.50e-21 | 69.3% | 29.2% |
| PF00998.29 | RdRP_3 | 75.7 | 4.50e-21 | 30.7% | 12.8% |
D3
medium
residues 173-213_276-346
Domain cluster:
rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 60.9 | 1.40e-16 | 64.3% | 14.6% |
| PF00998.29 | RdRP_3 | 34.9 | 1.00e-08 | 36.6% | 8.2% |