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hypothetical_protein_1

Euk-Vir

Sanxia_water_strider_virus_17

hypothetical_protein_1__YP_009337232__Sanxia_water_strider_virus_17__1923401

Identity

Accession:
YP_009337232 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Sanxia_water_strider_virus_17

TaxID: 1923401

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 741-856
PDB
Domain cluster: rep: hypothetical_protein__YP_009329984__Beihai_noda-like_virus_29__1922483__D408-447_732-867
D2 medium residues 88-204_236-294
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337879__Hubei_noda-like_virus_9__1922989__D136-259_287-345
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19222.6 best Noda_Vmethyltr 133.0 1.00e-38 71.0% 76.3%
D3 medium residues 205-235_295-379
PDB
Domain cluster: rep: hypothetical_protein__YP_009329958__Beihai_noda-like_virus_18__1922471__D201-230_309-395
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 30.0 3.78e-01 100.0% 89.4%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 33.0 3.99e-01 100.0% 90.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 3.42e-01 96.6% 81.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.26e-01 100.0% 82.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.33e-01 100.0% 72.1%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.22e-01 97.4% 85.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940485 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 42.0 4.13e-01 74.1% 83.2%
3970026 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 49.0 3.61e-01 99.1% 83.5%
3252933 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 32.0 3.41e-01 87.9% 66.0%
None — 0.53 31.0 3.35e-01 87.1% 65.7%
4224260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 4.00e-01 88.8% 87.4%
3846124 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 3.37e-01 96.6% 69.7%
3235272 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.52 44.0 3.35e-01 93.1% 64.6%
3782385 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.52 41.0 2.83e-01 87.1% 56.0%
3453961 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 3.08e-01 91.4% 55.7%
3932180 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.30e-01 97.4% 77.1%
3936499 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.73e-01 97.4% 32.2%
4002675 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.51 43.0 3.36e-01 94.8% 64.4%
145091 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 45.0 3.33e-01 100.0% 72.1%
3531756 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.51 42.0 3.32e-01 93.1% 80.0%
D4 medium residues 451-463_643-707
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h5xA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.77 60.0 5.23e-01 83.3% 59.5%
3fryA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 41.0 4.48e-01 82.1% 76.6%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 47.0 4.66e-01 75.6% 74.4%
3k3fA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.64 49.0 3.27e-01 83.3% 32.5%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.61 40.0 4.24e-01 70.5% 76.5%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 4.12e-01 73.1% 74.3%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 40.0 4.04e-01 71.8% 96.2%
3e70C01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.55 39.0 3.70e-01 75.6% 66.0%
1qgiA01 3.30.386.10 Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 0.55 41.0 3.45e-01 83.3% 61.2%
2b4vA01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.53 45.0 3.34e-01 97.4% 92.7%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.51 41.0 3.63e-01 88.5% 91.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3441452 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.74 51.0 5.03e-01 83.3% 67.1%
3371249 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.69 45.0 5.01e-01 74.4% 88.3%
4524416 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.66 48.0 4.36e-01 76.9% 59.0%
4976283 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.66 48.0 4.15e-01 75.6% 52.2%
3265661 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.66 41.0 4.32e-01 71.8% 70.0%
3966878 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.65 42.0 4.40e-01 70.5% 71.4%
3818981 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.63 45.0 4.51e-01 83.3% 73.8%
3664456 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.63 46.0 4.49e-01 82.1% 68.9%
3210445 3685.1.1.1 ↗ a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.63 51.0 4.65e-01 84.6% 99.0%
3378851 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.63 43.0 4.32e-01 71.8% 70.0%
3263653 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.62 46.0 3.66e-01 80.8% 90.3%
5004297 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.60 42.0 3.85e-01 74.4% 97.1%
4945955 181.1.1.32 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 0.59 42.0 4.10e-01 74.4% 77.6%
3226204 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.57 39.0 3.64e-01 100.0% 56.8%
5005678 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.57 42.0 3.61e-01 78.2% 50.4%
5078551 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 31.0 3.45e-01 97.4% 70.0%
3899311 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 2.53e-01 79.5% 19.8%
3568354 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.55e-01 70.5% 80.0%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.53 38.0 3.70e-01 75.6% 74.1%
4983602 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.52 40.0 3.21e-01 83.3% 86.3%
3716683 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.50 38.0 3.21e-01 82.1% 81.5%
D5 medium residues 525-551_592-642
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009344999__Wuhan_spider_virus_9__1923758__D188-213_258-308
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 42.0 4.21e-01 89.7% 76.9%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.57 47.0 3.07e-01 89.7% 96.5%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.56 39.0 2.68e-01 74.4% 93.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.55 39.0 3.66e-01 92.3% 59.4%
2paqA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 45.0 3.46e-01 91.0% 81.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 43.0 4.14e-01 85.9% 94.3%
1yt5A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.52 38.0 3.25e-01 78.2% 56.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.89 83.0 5.13e-01 100.0% 30.2%
3663947 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.66 44.0 5.24e-01 83.3% 98.1%
3646179 4030.1.1.20 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate 0.66 44.0 5.23e-01 83.3% 98.2%
3303808 605.8.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Ovate 0.65 45.0 5.25e-01 80.8% 100.0%
3456007 532.2.1.8 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › Ovate 0.64 43.0 5.10e-01 80.8% 100.0%
3433700 639.1.1.2 ↗ alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › Ovate 0.64 44.0 4.94e-01 79.5% 91.7%
3352416 639.1.1.2 ↗ alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › Ovate 0.63 43.0 5.03e-01 80.8% 100.0%
3673670 639.2.1.4 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › Ovate 0.60 46.0 5.08e-01 82.1% 96.9%
3716282 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.56 45.0 3.07e-01 88.5% 77.2%
3716558 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 44.0 3.14e-01 88.5% 76.4%
None — 0.54 39.0 2.82e-01 93.6% 24.4%
4106869 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.52 32.0 3.34e-01 89.7% 65.7%
3972594 3714.1.1.1 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.51 42.0 2.98e-01 92.3% 29.4%
5038479 3563.1.1.1 ↗ alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.50 41.0 2.97e-01 94.9% 53.2%
D6 medium residues 552-591_708-740
PDB
Domain cluster: representative