hypothetical_protein_1

Euk-Vir

Sanxia_tombus-like_virus_6

hypothetical_protein_1__YP_009337329__Sanxia_tombus-like_virus_6__1923390

Identity

80.6 mean pLDDT

Sanxia_tombus-like_virus_6

TaxID: 1923390

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 336-473

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6srbA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	33.0	3.66e-01	86.2%	72.5%
1cb8A01	1.50.10.100	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase	0.55	40.0	3.05e-01	73.2%	38.8%
4c0aA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.55	34.0	3.64e-01	93.5%	70.3%
4bzaA03	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.52	24.0	3.05e-01	89.9%	72.2%
5ab0C04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.51	38.0	2.95e-01	77.5%	90.2%
2rccA01	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.51	39.0	3.19e-01	80.4%	83.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3606155	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	39.0	3.19e-01	76.8%	55.6%
3571190	109.25.1.7 ↗	alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › PF26588	0.50	36.0	3.85e-01	83.3%	87.8%
3504305	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.50	33.0	3.66e-01	87.7%	86.7%

D2 medium residues 52-151_218-234

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333161__Hubei_tombus-like_virus_32__1923280__D105-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	35.8	5.60e-09	82.0%	14.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pggA01	3.90.1730.10	Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain	0.70	63.0	4.52e-01	100.0%	66.5%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2541763	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.77	71.0	4.92e-01	100.0%	57.6%
1875037	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.75	68.0	4.71e-01	100.0%	54.3%
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.74	67.0	4.69e-01	100.0%	55.8%
None	—		0.71	65.0	4.54e-01	100.0%	55.7%
3267570	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.61	54.0	3.88e-01	98.3%	56.3%
3250871	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.59	41.0	3.82e-01	70.9%	69.3%
3923013	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	50.0	3.62e-01	95.7%	56.2%

D3 medium residues 152-217_235-335

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	35.8	5.60e-09	66.5%	22.0%