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hypothetical_protein_1

Euk-Vir

Wenzhou_sobemo-like_virus_2

hypothetical_protein_1__YP_009337334__Wenzhou_sobemo-like_virus_2__1923658

Identity

Accession:
YP_009337334 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

51.1 mean pLDDT

Taxonomy

Wenzhou_sobemo-like_virus_2

TaxID: 1923658

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30_113-200_223-247
PDB
D2 medium residues 31-112
PDB
Domain cluster: rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 76.0 7.27e-01 98.8% 100.0%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 73.0 7.36e-01 98.8% 100.0%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 71.0 6.77e-01 98.8% 96.8%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 69.0 6.23e-01 98.8% 87.9%
7u5bJ01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 59.0 6.12e-01 96.3% 88.5%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 65.0 5.64e-01 100.0% 63.3%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 69.0 6.20e-01 98.8% 83.3%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 68.0 6.70e-01 100.0% 93.1%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 67.0 6.04e-01 98.8% 86.6%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 68.0 5.43e-01 100.0% 79.0%
1dx5M02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 67.0 5.88e-01 98.8% 88.2%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 62.0 6.39e-01 100.0% 96.1%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 55.0 6.08e-01 100.0% 97.0%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 54.0 4.88e-01 100.0% 57.1%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 58.0 5.47e-01 100.0% 85.7%
1uh9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 54.0 4.57e-01 98.8% 89.9%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 51.0 3.91e-01 91.5% 37.6%
1yg9A03 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.62 51.0 4.58e-01 92.7% 98.3%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 55.0 5.42e-01 100.0% 100.0%
1am5A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 52.0 4.36e-01 98.8% 90.8%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.61 51.0 4.82e-01 97.6% 96.2%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 51.0 4.97e-01 98.8% 91.4%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 52.0 4.75e-01 100.0% 91.9%
1dpjA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 50.0 4.19e-01 98.8% 90.3%
7tbdB02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 50.0 4.10e-01 98.8% 87.1%
4lwoB02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.57 45.0 3.58e-01 90.2% 97.3%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 48.0 4.05e-01 98.8% 88.8%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 51.0 3.97e-01 100.0% 81.4%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.90e-01 82.9% 69.8%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 43.0 3.85e-01 89.0% 84.7%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.54 42.0 3.25e-01 82.9% 55.8%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 4.15e-01 82.9% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.36e-01 76.8% 58.1%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.52 38.0 2.93e-01 79.3% 52.1%
2jc4A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 39.0 2.86e-01 82.9% 59.4%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.01e-01 86.6% 54.2%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.51 37.0 3.84e-01 80.5% 82.9%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.51 41.0 2.83e-01 91.5% 58.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393791 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 70.0 4.87e-01 100.0% 37.6%
3907690 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 68.0 5.03e-01 100.0% 41.9%
4338510 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 69.0 4.98e-01 100.0% 37.7%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 66.0 5.04e-01 100.0% 43.3%
3400042 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 69.0 4.87e-01 100.0% 40.0%
4221728 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 64.0 4.57e-01 100.0% 33.0%
4995689 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 65.0 4.78e-01 100.0% 38.9%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 65.0 4.56e-01 100.0% 39.2%
3464880 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 65.0 4.72e-01 100.0% 38.1%
4683578 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 65.0 4.62e-01 100.0% 47.6%
4969517 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 4.94e-01 97.6% 82.5%
4031786 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.64 51.0 5.12e-01 87.8% 100.0%
4974921 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 34.0 3.69e-01 86.6% 61.4%
4601024 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.63 54.0 3.63e-01 98.8% 38.3%
4064478 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.63 54.0 3.64e-01 98.8% 38.3%
1249509 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.63 54.0 4.52e-01 98.8% 90.8%
4670281 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.63 54.0 3.65e-01 98.8% 40.9%
3310306 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.62 51.0 3.54e-01 93.9% 47.0%
3813364 1.1.1.9 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.62 52.0 4.09e-01 97.6% 80.0%
4023661 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.60 51.0 3.33e-01 98.8% 35.1%
4024902 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 50.0 3.26e-01 97.6% 36.1%
3805413 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.58 50.0 3.44e-01 100.0% 51.1%
5010981 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 36.0 4.22e-01 96.3% 92.7%
3637907 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.58 49.0 3.87e-01 98.8% 73.5%
3380353 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.58 50.0 3.47e-01 100.0% 49.0%
4221193 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.57 48.0 3.35e-01 100.0% 64.0%
5010554 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 38.0 4.21e-01 72.0% 89.2%
4968844 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 40.0 4.05e-01 78.0% 75.0%
3867750 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 48.0 3.90e-01 98.8% 82.4%
4966867 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.55 38.0 3.88e-01 84.1% 73.8%
3679149 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 31.0 2.66e-01 93.9% 31.7%
4988955 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.54 38.0 4.31e-01 74.4% 98.3%
5040273 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.54 38.0 4.00e-01 84.1% 82.7%
5033093 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.54e-01 78.0% 85.2%
4945624 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.54 39.0 3.00e-01 76.8% 59.5%
5034646 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.54 38.0 3.84e-01 86.6% 75.0%
4929307 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.53 41.0 4.19e-01 84.1% 85.0%
4991995 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.53 40.0 4.33e-01 84.1% 100.0%
3700987 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 46.0 3.50e-01 97.6% 43.5%
5069121 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.53 37.0 4.16e-01 79.3% 98.3%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.53 38.0 3.36e-01 76.8% 58.1%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.52 38.0 3.39e-01 76.8% 72.2%