←Back to structures
hypothetical_protein_1
Euk-VirSanxia_tombus-like_virus_9
hypothetical_protein_1__YP_009337396__Sanxia_tombus-like_virus_9__1923393
Identity
- Accession:
- YP_009337396 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
51.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 169-228_285-388
Domain cluster:
rep: hypothetical_protein_AACVs1_gp2__YP_009011226__Anopheline-associated_C_virus_Viruses.__X__D149-168_223-340
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19223.6 best | Chropara_Vmeth | 163.4 | 1.10e-47 | 65.8% | 34.3% |
D2
high
residues 406-525
Domain cluster:
rep: hypothetical_protein_1__YP_009337802__Hubei_tombus-like_virus_43__1923291__D506-598
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19223.6 best | Chropara_Vmeth | 79.7 | 3.20e-22 | 85.0% | 32.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nq2A00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.59 | 41.0 | 3.06e-01 | 72.5% | 77.6% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.58 | 38.0 | 4.34e-01 | 73.3% | 93.0% |
| 3h9pA00 | 1.10.4200.10 | Mainly Alpha › Orthogonal Bundle › Triphosphoribosyl-dephospho-CoA protein › Triphosphoribosyl-dephospho-CoA protein | 0.57 | 43.0 | 3.54e-01 | 80.8% | 89.4% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 37.0 | 4.02e-01 | 71.7% | 81.8% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.55 | 30.0 | 3.15e-01 | 73.3% | 56.0% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.55 | 36.0 | 3.63e-01 | 70.0% | 65.6% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.54 | 34.0 | 3.58e-01 | 73.3% | 70.1% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.53 | 39.0 | 4.03e-01 | 77.5% | 84.8% |
| 2qwtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 42.0 | 3.81e-01 | 87.5% | 99.4% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 36.0 | 3.37e-01 | 70.8% | 100.0% |
| 2h7fX02 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.52 | 36.0 | 2.95e-01 | 72.5% | 89.2% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.91e-01 | 94.2% | 62.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959935 | 1197.1.1.0 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY | 0.63 | 45.0 | 3.51e-01 | 75.0% | 36.3% |
| 4964648 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.59 | 41.0 | 3.30e-01 | 71.7% | 56.6% |
| 3777243 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.55 | 38.0 | 3.72e-01 | 74.2% | 63.0% |
| 5024547 | 5051.1.1.2 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease | 0.55 | 43.0 | 2.89e-01 | 82.5% | 68.1% |
| 3711198 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.52 | 32.0 | 3.79e-01 | 85.0% | 88.2% |
| 3283090 | 11.1.1.1232 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26059 | 0.51 | 24.0 | 2.95e-01 | 70.0% | 67.5% |
| 3682591 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.51 | 38.0 | 2.27e-01 | 78.3% | 20.3% |
| 3998222 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.50 | 36.0 | 3.30e-01 | 73.3% | 92.9% |