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hypothetical_protein_1

Euk-Vir

Changjiang_tombus-like_virus_9

hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823

Identity

Accession:: YP_009337417 ↗
Protein ID:: hypothetical_protein_1
Kingdom:: euk

Quality

70.1 mean pLDDT

Taxonomy

Changjiang_tombus-like_virus_9

TaxID: 1922823

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 231-331

PDB

D2 high residues 716-866

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	97.1	1.50e-27	89.4%	28.2%

D3 medium residues 348-350_352-432_502-513

PDB

Domain cluster: representative

D4 medium residues 433-455_542-560_588-652

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	85.1	6.50e-24	62.6%	13.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.60	49.0	4.19e-01	89.7%	94.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4289835	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.64	45.0	3.63e-01	72.9%	49.5%
141070	223.3.1.1 ↗	a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase	0.57	19.0	2.66e-01	79.4%	56.1%

D5 medium residues 456-501_514-541

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D425-467_490-526

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	30.5	2.40e-07	100.0%	18.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pjrA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	42.0	3.09e-01	78.4%	89.5%
4fqnC00	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.56	41.0	3.97e-01	78.4%	70.6%
1x3aA00	1.10.3970.10	Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain	0.55	40.0	3.66e-01	100.0%	58.0%
4c2uA02	1.10.10.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	37.0	3.68e-01	77.0%	85.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2512535	3187.1.1.1 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › MT	0.55	41.0	3.24e-01	81.1%	63.8%
3800197	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.55	36.0	3.48e-01	86.5%	56.7%
4935350	4018.1.1.2 ↗	a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P	0.54	40.0	3.15e-01	79.7%	90.3%

D6 medium residues 561-587_653-714

PDB

Domain cluster: rep: IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630063__D4-82

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	69.1	4.60e-19	70.8%	12.8%
PF00998.29	RdRP_3	33.2	3.50e-08	32.6%	5.3%