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hypothetical_protein_1

Euk-Vir

Changjiang_tombus-like_virus_5

hypothetical_protein_1__YP_009337431__Changjiang_tombus-like_virus_5__1922819

Identity

Accession:
YP_009337431 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

60.5 mean pLDDT

Taxonomy

Changjiang_tombus-like_virus_5

TaxID: 1922819

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-194
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08500.17 best Tombus_P33 39.8 8.20e-10 93.7% 54.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hn2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 44.0 4.24e-01 81.1% 65.6%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 32.0 3.75e-01 93.7% 72.7%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 48.0 4.21e-01 87.4% 76.9%
1tt5B02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.59 39.0 4.54e-01 85.6% 98.7%
7shlA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.58 44.0 4.30e-01 80.2% 95.1%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 45.0 4.52e-01 84.7% 93.9%
4ii2A02 3.40.50.12550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 0.57 49.0 3.94e-01 93.7% 83.4%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 4.10e-01 91.9% 65.9%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.32e-01 87.4% 89.7%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 43.0 4.36e-01 83.8% 95.5%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 36.0 4.24e-01 91.0% 97.4%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.53 44.0 4.26e-01 93.7% 90.0%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.53 39.0 3.71e-01 77.5% 72.5%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.53 46.0 4.08e-01 100.0% 95.9%
4crwA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 3.53e-01 92.8% 46.5%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 41.0 4.09e-01 88.3% 95.6%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.50 41.0 3.00e-01 91.0% 81.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039840 1075.1.1.19 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_4 0.62 48.0 3.72e-01 82.0% 59.6%
3530124 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 38.0 4.32e-01 82.0% 96.2%
3645720 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.56 41.0 3.72e-01 89.2% 56.7%
3246495 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.56 40.0 2.62e-01 82.0% 15.4%
3690922 109.4.1.427 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT 0.55 46.0 2.86e-01 93.7% 14.8%
None — 0.54 46.0 3.35e-01 91.9% 83.2%
3701680 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.54 44.0 4.62e-01 93.7% 99.0%
3591733 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 4.17e-01 94.6% 81.4%
3689499 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.32e-01 93.7% 79.2%
3789554 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 37.0 4.07e-01 91.9% 93.3%
2492494 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.51 35.0 3.73e-01 77.5% 80.9%
4928737 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.51 39.0 4.18e-01 89.2% 95.8%
3730933 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 2.94e-01 92.8% 34.6%
3739500 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.50 44.0 2.98e-01 98.2% 58.5%
3404501 706.1.1.2 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP 0.50 45.0 3.73e-01 99.1% 92.8%
3940925 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.50 40.0 3.62e-01 88.3% 80.0%