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hypothetical_protein_1

Euk-Vir

Hubei_tombus-like_virus_3

hypothetical_protein_1__YP_009337771__Hubei_tombus-like_virus_3__1923277

Identity

Accession:
YP_009337771 ↗
Protein ID:
hypothetical_protein_1
Kingdom:
euk

Quality

58.0 mean pLDDT

Taxonomy

Hubei_tombus-like_virus_3

TaxID: 1923277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-192
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08500.17 best Tombus_P33 73.9 2.40e-20 87.3% 44.4%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ol9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.74 61.0 4.97e-01 88.7% 57.5%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 46.0 5.42e-01 76.1% 95.8%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.68 50.0 4.68e-01 78.9% 65.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.02e-01 88.7% 86.2%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 49.0 3.39e-01 80.3% 44.2%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 47.0 4.75e-01 81.7% 83.3%
1tt5B02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.62 47.0 4.63e-01 81.7% 80.5%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 43.0 3.54e-01 78.9% 38.6%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.62 52.0 4.89e-01 98.6% 80.4%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.61 40.0 4.14e-01 71.8% 71.6%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 41.0 3.28e-01 71.8% 41.1%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.59 42.0 4.43e-01 74.6% 93.5%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 37.0 3.90e-01 95.8% 71.9%
7e5aB02 1.20.1000.10 Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain 0.57 48.0 3.81e-01 100.0% 49.4%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.57 43.0 3.93e-01 84.5% 83.0%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.56 47.0 4.11e-01 97.2% 66.1%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 43.0 3.79e-01 83.1% 85.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 40.0 4.16e-01 90.1% 83.6%
4lvpA00 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.54 38.0 3.26e-01 74.6% 67.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.53 37.0 3.63e-01 78.9% 67.1%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.53 39.0 3.81e-01 77.5% 83.5%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 36.0 3.15e-01 70.4% 66.0%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.52 39.0 2.99e-01 77.5% 53.3%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.51 42.0 3.13e-01 95.8% 78.1%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 40.0 4.19e-01 94.4% 100.0%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 41.0 3.74e-01 95.8% 79.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014527 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.71 57.0 5.23e-01 88.7% 75.8%
4328219 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.71 52.0 4.14e-01 76.1% 50.4%
3171699 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.71 61.0 5.52e-01 100.0% 73.0%
None — 0.71 55.0 3.52e-01 84.5% 19.1%
3170802 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.70 60.0 5.51e-01 100.0% 77.9%
3746214 170.1.1.5 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Gag_p24_C 0.69 46.0 4.54e-01 80.3% 65.3%
5036736 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.68 55.0 5.23e-01 88.7% 76.5%
4351255 191.1.1.91 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › PF29842 0.68 56.0 5.24e-01 91.5% 81.1%
4990634 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.68 53.0 4.95e-01 85.9% 75.6%
3435792 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.68 53.0 3.38e-01 84.5% 18.2%
3346187 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 43.0 4.39e-01 70.4% 71.4%
1211456 610.3.1.2 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R2,tRNA_synt_1c_R1 0.64 47.0 3.56e-01 81.7% 32.3%
4046399 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.62 54.0 5.15e-01 100.0% 83.5%
3571858 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.62 47.0 3.90e-01 87.3% 44.6%
5073264 7577.1.1.4 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC 0.61 52.0 3.30e-01 100.0% 63.4%
4934951 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.60 46.0 4.34e-01 84.5% 75.6%
5011971 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.60 47.0 4.52e-01 84.5% 85.0%
3291410 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.59 45.0 4.47e-01 84.5% 93.3%
3823869 101.1.10.2 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 0.59 41.0 2.76e-01 74.6% 59.4%
3690435 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.59 50.0 3.57e-01 98.6% 42.4%
4019433 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.57 41.0 4.22e-01 81.7% 83.1%
5074758 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.57 44.0 4.25e-01 84.5% 85.0%
1694870 3996.1.1.0 ↗ alpha complex topology › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain 0.57 45.0 4.08e-01 90.1% 87.4%
4927512 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.57 44.0 4.12e-01 84.5% 78.9%
3229576 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.55 35.0 3.39e-01 83.1% 56.2%
4948274 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.54 45.0 4.49e-01 95.8% 96.0%
3364093 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 39.0 4.05e-01 76.1% 83.1%
3592998 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 44.0 2.81e-01 100.0% 59.1%
3477766 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 42.0 4.01e-01 90.1% 76.5%
5070523 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.52 40.0 3.66e-01 84.5% 76.8%
5072742 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.50 42.0 2.88e-01 100.0% 57.3%
D2 medium residues 30-82
PDB