←Back to structures

hypothetical_protein_1

Euk-Vir

Wenzhou_tombus-like_virus_4

hypothetical_protein_1__YP_009342057__Wenzhou_tombus-like_virus_4__1923674

Identity

Accession:: YP_009342057 ↗
Protein ID:: hypothetical_protein_1
Kingdom:: euk

Quality

56.6 mean pLDDT

Taxonomy

Wenzhou_tombus-like_virus_4

TaxID: 1923674

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-156

PDB

D2 medium residues 637-674_735-759

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3877614	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.52	41.0	3.11e-01	93.7%	36.7%

D3 medium residues 795-830_891-968

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	96.9	1.70e-27	69.3%	16.3%
PF00998.29	RdRP_3	36.8	2.90e-09	32.5%	6.6%

D4 medium residues 969-1024

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	32.9	4.50e-08	100.0%	11.5%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8be0A01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.72	52.0	3.63e-01	78.6%	100.0%
1khvA05	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.64	54.0	4.63e-01	100.0%	66.0%
3o8oB04	3.40.50.460	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain	0.64	47.0	3.41e-01	78.6%	63.2%
2a2jA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.63	46.0	3.10e-01	76.8%	23.2%
1ci0B00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.60	44.0	2.98e-01	76.8%	23.0%
3mpxA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.60	44.0	3.06e-01	80.4%	80.6%
6muwN00	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.55	46.0	3.01e-01	89.3%	76.8%
1is8A01	1.10.286.10	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain	0.53	42.0	4.14e-01	92.9%	90.0%
1q35A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.53	41.0	2.97e-01	87.5%	78.9%
4k3bA04	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.52	37.0	3.46e-01	80.4%	84.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4813923	4967.1.1.14 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb	0.80	63.0	6.44e-01	87.5%	100.0%
2858908	170.1.1.4 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Arc_C	0.63	40.0	4.12e-01	71.4%	67.9%
3897328	2003.1.5.111 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22	0.60	48.0	2.99e-01	87.5%	17.4%
3201652	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.56	45.0	4.62e-01	89.3%	100.0%
3927056	603.1.1.1 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin	0.56	49.0	3.35e-01	100.0%	44.8%
3332729	239.3.1.1 ↗	beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin	0.55	40.0	3.11e-01	76.8%	88.1%

D5 medium residues 1025-1118

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2i87B02	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.53	41.0	3.45e-01	81.9%	94.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3873356	101.1.1.36 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN	0.52	37.0	3.83e-01	89.4%	77.8%