←Back to structures
hypothetical_protein_1
Euk-VirWenzhou_tombus-like_virus_3
hypothetical_protein_1__YP_009342274__Wenzhou_tombus-like_virus_3__1923673
Identity
- Accession:
- YP_009342274 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-138
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08500.17 best | Tombus_P33 | 35.3 | 1.90e-08 | 73.9% | 45.2% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.70 | 53.0 | 5.03e-01 | 80.4% | 73.1% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 49.0 | 3.89e-01 | 72.8% | 47.5% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.63 | 52.0 | 4.26e-01 | 90.2% | 83.0% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 43.0 | 3.76e-01 | 70.7% | 94.3% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 42.0 | 3.93e-01 | 78.3% | 57.1% |
| 3cx5A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.61 | 48.0 | 3.67e-01 | 87.0% | 83.4% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.60 | 43.0 | 4.27e-01 | 75.0% | 75.5% |
| 2ebiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 40.0 | 4.48e-01 | 78.3% | 97.0% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.15e-01 | 76.1% | 77.5% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 4.28e-01 | 73.9% | 89.7% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.58 | 43.0 | 4.03e-01 | 78.3% | 68.7% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.58 | 44.0 | 4.50e-01 | 82.6% | 83.7% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.58 | 42.0 | 3.66e-01 | 78.3% | 76.6% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.58 | 42.0 | 3.69e-01 | 77.2% | 51.1% |
| 1hbgA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 42.0 | 3.61e-01 | 76.1% | 96.6% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.57 | 42.0 | 4.34e-01 | 78.3% | 83.7% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.55 | 38.0 | 3.54e-01 | 70.7% | 85.5% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.76e-01 | 77.2% | 80.0% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.54 | 37.0 | 3.30e-01 | 71.7% | 78.1% |
| 3b5iA02 | 1.10.1200.220 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.54 | 38.0 | 3.79e-01 | 73.9% | 78.9% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.53 | 36.0 | 2.92e-01 | 71.7% | 80.1% |
| 4fm3A00 | 1.20.1270.390 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 43.0 | 4.31e-01 | 90.2% | 88.4% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 39.0 | 3.41e-01 | 83.7% | 69.2% |
| 3sqnA02 | 1.10.1790.40 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.50 | 34.0 | 3.18e-01 | 75.0% | 55.1% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.50 | 32.0 | 2.85e-01 | 72.8% | 41.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.70 | 53.0 | 4.59e-01 | 80.4% | 56.4% |
| 3945879 | 101.38.1.4 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 | 0.68 | 52.0 | 4.89e-01 | 80.4% | 69.1% |
| 3404768 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.67 | 60.0 | 4.01e-01 | 100.0% | 76.4% |
| 3940823 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.66 | 45.0 | 4.24e-01 | 73.9% | 56.5% |
| 4927722 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 43.0 | 4.12e-01 | 70.7% | 95.5% |
| 4292858 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.62 | 45.0 | 3.52e-01 | 77.2% | 53.3% |
| 3997639 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.62 | 47.0 | 3.28e-01 | 81.5% | 47.0% |
| 3227144 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.61 | 42.0 | 4.04e-01 | 70.7% | 78.1% |
| 1276701 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.61 | 41.0 | 3.71e-01 | 78.3% | 49.2% |
| 5052475 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.61 | 48.0 | 4.34e-01 | 85.9% | 85.4% |
| 3742790 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.61 | 44.0 | 4.37e-01 | 76.1% | 89.5% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.61 | 46.0 | 4.83e-01 | 80.4% | 95.0% |
| 4399510 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.60 | 50.0 | 3.89e-01 | 94.6% | 46.5% |
| 3173502 | 4982.1.1.4 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › SYS1 | 0.59 | 47.0 | 4.11e-01 | 85.9% | 59.3% |
| 4390743 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.58 | 50.0 | 4.16e-01 | 96.7% | 60.6% |
| 4975796 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.58 | 42.0 | 4.24e-01 | 78.3% | 81.1% |
| 3520490 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.54 | 45.0 | 4.25e-01 | 91.3% | 89.1% |
| 3600971 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.54 | 46.0 | 3.14e-01 | 95.7% | 28.0% |
| 395385 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.53 | 39.0 | 3.44e-01 | 78.3% | 54.6% |
| 4018806 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.53 | 47.0 | 4.69e-01 | 97.8% | 96.8% |
| 4313126 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 2.85e-01 | 81.5% | 27.3% |
| 2503462 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.51 | 41.0 | 4.14e-01 | 87.0% | 86.2% |