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hypothetical_protein_1

Euk-Vir

Wenzhou_tombus-like_virus_1

hypothetical_protein_1__YP_009342279__Wenzhou_tombus-like_virus_1__1923662

Identity

Accession:: YP_009342279 ↗
Protein ID:: hypothetical_protein_1
Kingdom:: euk

Quality

79.2 mean pLDDT

Taxonomy

Wenzhou_tombus-like_virus_1

TaxID: 1923662

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-129

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_002302259__Carrot_mottle_virus__68033__D254-317

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08500.17 best	Tombus_P33	81.4	1.20e-22	87.3%	45.2%

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.72	48.0	5.31e-01	81.7%	87.5%
2aj4B03	1.20.1440.340	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.72	50.0	3.79e-01	71.8%	69.8%
1ls1A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.69	52.0	4.84e-01	80.3%	76.4%
2ddhA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.68	51.0	4.35e-01	80.3%	52.5%
2q0yA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.66	44.0	3.52e-01	71.8%	34.8%
3sjrA00	1.10.132.90	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.63	47.0	3.96e-01	81.7%	68.3%
7vtgA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.62	47.0	3.11e-01	81.7%	83.0%
3c7jA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	42.0	3.91e-01	83.1%	56.0%
1xszA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.60	49.0	4.31e-01	94.4%	97.4%
1irxA05	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.60	47.0	4.30e-01	85.9%	78.5%
4dokA01	3.50.70.10	Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase ›	0.59	41.0	3.21e-01	71.8%	65.2%
2cdqA02	1.20.120.1320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain	0.59	43.0	3.98e-01	80.3%	71.1%
2f33A01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.59	42.0	4.27e-01	76.1%	78.9%
5ts9B00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.58	48.0	3.86e-01	100.0%	49.1%
2iw3A02	1.20.1390.20	Mainly Alpha › Up-down Bundle › PWI domain ›	0.57	49.0	4.56e-01	98.6%	85.6%
1yfmA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.56	40.0	3.35e-01	76.1%	46.8%
2gbbB00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.55	46.0	3.71e-01	98.6%	50.3%
1sqhA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.54	38.0	2.83e-01	71.8%	77.1%
6z01B01	1.10.10.41	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1	0.54	45.0	4.41e-01	100.0%	97.4%
1cnt200	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.53	39.0	3.27e-01	80.3%	96.9%
2lsgA00	1.20.58.1280	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain	0.52	40.0	3.66e-01	94.4%	61.9%
5c0yA02	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.51	42.0	3.86e-01	91.5%	75.3%
5f64A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	37.0	3.70e-01	93.0%	76.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4318142	230.3.1.1 ↗	a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS	0.79	58.0	4.47e-01	76.1%	57.9%
3923696	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.68	49.0	4.60e-01	77.5%	73.3%
4426344	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.67	53.0	5.39e-01	90.1%	91.2%
4028839	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.65	42.0	4.11e-01	70.4%	58.7%
4977379	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.64	45.0	4.45e-01	73.2%	81.3%
3698416	844.1.1.0 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain	0.64	48.0	3.35e-01	81.7%	81.7%
4996540	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.63	51.0	4.82e-01	88.7%	76.5%
4257656	166.1.1.1 ↗	alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C	0.62	38.0	3.52e-01	70.4%	47.8%
163944	164.1.1.1 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2	0.58	47.0	3.85e-01	98.6%	50.0%
4023360	109.57.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Sterol regulatory element-binding protein 1 (Sre1) C-terminal domain › Sterol regulatory element-binding protein 1 (Sre1) C-terminal domain › DUF2014	0.53	43.0	2.68e-01	90.1%	46.6%
3488467	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.51	40.0	3.48e-01	91.5%	53.9%
5082058	164.1.1.1 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2	0.51	41.0	4.11e-01	90.1%	94.7%

D2 medium residues 150-229_296-313

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	27.8	1.50e-06	64.3%	11.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6sulA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.56	42.0	3.36e-01	82.7%	94.4%

D3 medium residues 230-295_314-343_386-449

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	54.1	1.60e-14	61.3%	23.2%
PF00998.29	RdRP_3	87.7	1.10e-24	40.6%	13.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.65	57.0	5.55e-01	93.8%	94.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4361688	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.64	60.0	4.49e-01	100.0%	62.9%
4966910	7518.1.1.6 ↗	a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_A	0.52	32.0	3.63e-01	98.8%	81.7%
4939916	5104.1.1.0 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases	0.50	22.0	2.80e-01	85.6%	68.9%

D4 medium residues 344-385_450-514

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	74.7	8.90e-21	61.7%	13.4%
PF00998.29	RdRP_3	52.3	5.80e-14	41.1%	8.6%

D5 medium residues 515-643

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	94.7	7.70e-27	99.2%	27.4%