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hypothetical_protein_1
Euk-VirWuchang_romanomermis_nematode_virus_2
hypothetical_protein_1__YP_009342281__Wuchang_romanomermis_nematode_virus_2__2773460
Identity
- Accession:
- YP_009342281 ↗
- Protein ID:
- hypothetical_protein_1
- Kingdom:
- euk
Quality
70.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Lispiviridae›
Nematovirus›
Wuchang_romanomermis_nematode_virus_2
TaxID: 2773460
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-230
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.66 | 37.0 | 3.04e-01 | 99.5% | 31.6% |
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.58 | 52.0 | 5.24e-01 | 99.0% | 97.4% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.54 | 18.0 | 3.09e-01 | 96.4% | 90.3% |
| 2wocA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.51 | 37.0 | 3.27e-01 | 73.6% | 94.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507992 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.84 | 79.0 | 6.50e-01 | 100.0% | 59.7% |
| 3573542 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.81 | 72.0 | 6.00e-01 | 100.0% | 56.1% |
| 2756727 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.76 | 70.0 | 5.53e-01 | 100.0% | 58.1% |
| 2749214 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.74 | 69.0 | 5.50e-01 | 100.0% | 59.5% |
| 2521251 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.74 | 69.0 | 5.46e-01 | 100.0% | 58.1% |
| 2769765 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.74 | 69.0 | 5.44e-01 | 100.0% | 57.5% |
| 2522010 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.70 | 65.0 | 5.29e-01 | 100.0% | 55.2% |
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.70 | 65.0 | 5.22e-01 | 100.0% | 56.4% |
| 1815422 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.67 | 62.0 | 5.96e-01 | 100.0% | 100.0% |
| 3860700 | 109.25.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN | 0.55 | 32.0 | 3.96e-01 | 93.9% | 93.3% |
| 4562099 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.52 | 27.0 | 3.22e-01 | 73.1% | 72.3% |
| 3176893 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.50 | 38.0 | 2.80e-01 | 99.5% | 28.3% |
D2
high
residues 236-374
Domain cluster:
rep: hypothetical_protein_1__YP_009336884__Hubei_rhabdo-like_virus_3__1923187__D257-400
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 35.0 | 3.74e-01 | 83.5% | 76.5% |
| 1jfaB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 42.0 | 3.21e-01 | 89.2% | 94.3% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 38.0 | 3.60e-01 | 77.0% | 89.8% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 34.0 | 3.39e-01 | 78.4% | 65.1% |
| 1cpcA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.50 | 34.0 | 3.30e-01 | 76.3% | 60.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507992 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.86 | 67.0 | 4.93e-01 | 80.6% | 34.5% |
| 3573542 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.82 | 66.0 | 4.85e-01 | 83.5% | 36.1% |
| 3511477 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.74 | 68.0 | 4.92e-01 | 96.4% | 40.0% |
| 3911346 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.59 | 43.0 | 3.73e-01 | 76.3% | 95.0% |
| 4033977 | 3302.1.1.1 ↗ | alpha arrays › Hypothetical protein › Hypothetical protein › Hypothetical protein › DUF2538 | 0.51 | 34.0 | 3.39e-01 | 74.8% | 62.7% |