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hypothetical_protein_2

Euk-Vir

Hubei_sobemo-like_virus_12

hypothetical_protein_2__YP_009329979__Hubei_sobemo-like_virus_12__1923197

Identity

Accession:: YP_009329979 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

90.9 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_12

TaxID: 1923197

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 262-318

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4leuA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.80	66.0	4.58e-01	91.2%	33.0%
2cwyA00	1.10.3450.10	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like	0.70	53.0	4.51e-01	82.5%	64.5%
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.68	57.0	5.22e-01	100.0%	83.5%
8thmA01	1.20.120.1310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain	0.66	46.0	4.23e-01	75.4%	65.0%
3d1lA02	1.10.1040.20	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain	0.65	49.0	4.13e-01	82.5%	70.7%
2v6eA01	1.10.287.3180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	46.0	4.20e-01	75.4%	93.3%
3cerC01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.63	54.0	4.24e-01	100.0%	53.9%
3jamD02	3.30.1140.32	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain	0.63	44.0	3.49e-01	77.2%	67.7%
1u7kA00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.61	48.0	3.87e-01	94.7%	82.4%
3eoqB02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.61	45.0	3.14e-01	78.9%	69.4%
2vlbC00	3.40.50.12500	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	50.0	3.37e-01	100.0%	68.6%
4g1tA03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	47.0	3.25e-01	100.0%	28.9%
1h99A01	1.10.1790.10	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain	0.55	42.0	3.51e-01	84.2%	58.7%
2elcA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.52	42.0	4.04e-01	93.0%	91.0%
3osnA03	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.50	35.0	3.31e-01	80.7%	57.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3832139	109.4.1.1374 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24	0.74	65.0	3.81e-01	100.0%	14.8%
3668122	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.74	60.0	4.83e-01	89.5%	49.1%
3368712	109.4.1.1258 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2	0.73	64.0	3.86e-01	100.0%	16.9%
3308568	109.59.1.13 ↗	alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › E_motif	0.69	60.0	5.30e-01	100.0%	74.1%
5024095	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.65	49.0	3.32e-01	84.2%	24.3%
3217577	101.1.1.75 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_48	0.60	46.0	4.61e-01	87.7%	96.7%
3740014	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	38.0	3.66e-01	77.2%	87.1%

D2 medium residues 1-81_120-186

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	34.1	2.20e-08	58.1%	14.8%

D3 medium residues 82-119_187-261

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181