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hypothetical_protein_2

Euk-Vir

Beihai_sobemo-like_virus_26

hypothetical_protein_2__YP_009330000__Beihai_sobemo-like_virus_26__1922698

Identity

Accession:
YP_009330000 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

93.2 mean pLDDT

Taxonomy

Beihai_sobemo-like_virus_26

TaxID: 1922698

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 348-408
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009329996__Hubei_sobemo-like_virus_47__1923235__D310-369
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 56.0 4.13e-01 77.0% 55.0%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 56.0 4.16e-01 77.0% 55.4%
3nkyA03 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.76 66.0 6.26e-01 98.4% 82.2%
1ra6A03 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.76 65.0 5.88e-01 100.0% 77.0%
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 55.0 4.02e-01 77.0% 49.7%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.76 55.0 4.35e-01 77.0% 47.9%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 52.0 4.85e-01 77.0% 86.7%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 53.0 3.86e-01 80.3% 79.5%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.71 53.0 4.85e-01 80.3% 89.0%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 56.0 3.28e-01 90.2% 12.6%
3c64A00 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 52.0 3.90e-01 78.7% 88.2%
1j77A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.70 56.0 3.82e-01 85.2% 35.7%
3t8vA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.70 57.0 3.63e-01 95.1% 20.9%
2gmyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 59.0 4.47e-01 95.1% 53.1%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.69 50.0 3.91e-01 77.0% 68.0%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.68 56.0 3.60e-01 96.7% 30.9%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 49.0 3.74e-01 80.3% 55.8%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 53.0 3.59e-01 90.2% 31.9%
5dllA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.66 56.0 3.60e-01 100.0% 32.4%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 46.0 3.41e-01 77.0% 40.4%
2oqhA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 53.0 3.52e-01 91.8% 31.7%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 49.0 3.57e-01 88.5% 40.3%
7ewfA01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 53.0 3.67e-01 100.0% 42.2%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 46.0 3.51e-01 82.0% 83.6%
7vepA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 51.0 3.48e-01 96.7% 35.9%
3hr0A02 1.20.58.1970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 3.77e-01 95.1% 82.4%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 42.0 3.74e-01 73.8% 51.5%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 48.0 4.16e-01 93.4% 75.2%
1umnG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 48.0 3.64e-01 93.4% 85.5%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 51.0 3.49e-01 100.0% 52.1%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.58 46.0 4.02e-01 96.7% 57.4%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.57 45.0 3.47e-01 90.2% 55.6%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.57 47.0 4.24e-01 93.4% 96.5%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.57 43.0 4.36e-01 88.5% 98.4%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.54 40.0 2.97e-01 93.4% 29.9%
4a1nA02 6.10.250.1250 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.86e-01 72.1% 90.0%
1adeA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.50 44.0 3.77e-01 100.0% 88.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389960 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.86 62.0 5.46e-01 75.4% 76.5%
3420055 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.80 69.0 4.95e-01 95.1% 59.4%
3708550 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.78 57.0 3.76e-01 78.7% 20.8%
3648149 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.74 64.0 4.00e-01 95.1% 20.0%
3607987 109.4.1.2243 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29386 0.72 62.0 4.26e-01 100.0% 67.8%
3809338 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 59.0 4.10e-01 95.1% 31.6%
3453925 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.71 60.0 4.55e-01 95.1% 62.8%
3449359 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.69 59.0 3.83e-01 98.4% 23.0%
3909453 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.68 59.0 4.22e-01 100.0% 38.4%
3350773 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.68 58.0 4.17e-01 95.1% 54.3%
3269191 109.4.1.1573 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29376 0.68 58.0 4.78e-01 100.0% 84.9%
4944739 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 54.0 4.39e-01 90.2% 59.2%
3423594 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.68 59.0 3.94e-01 100.0% 27.6%
3595739 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.67 50.0 3.39e-01 80.3% 21.7%
3671366 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.67 56.0 3.23e-01 100.0% 16.6%
3328358 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 4.96e-01 98.4% 70.5%
3643652 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.65 56.0 4.35e-01 100.0% 44.8%
3647698 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 53.0 3.91e-01 95.1% 53.3%
3895604 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 50.0 3.79e-01 86.9% 42.5%
4410196 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.64 53.0 3.30e-01 96.7% 65.8%
3965857 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.64 53.0 4.75e-01 98.4% 69.1%
3287311 109.4.1.2330 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31120 0.63 52.0 4.52e-01 100.0% 74.3%
3727188 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 51.0 3.99e-01 95.1% 63.6%
3959976 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.62 52.0 4.03e-01 100.0% 67.3%
4185864 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 46.0 3.47e-01 85.2% 62.3%
3703106 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 2.83e-01 98.4% 6.1%
3608329 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 48.0 3.36e-01 93.4% 27.2%
4264622 604.39.1.5 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt 0.54 43.0 3.30e-01 100.0% 49.2%
D2 medium residues 17-62_139-182_209-274
PDB
Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 25.0 2.94e-01 94.2% 54.0%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 25.0 2.99e-01 92.9% 61.4%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 25.0 3.22e-01 98.1% 80.2%
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.51 22.0 3.11e-01 92.3% 85.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.76 71.0 5.17e-01 100.0% 62.3%
3245979 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 28.0 1.90e-01 76.3% 13.1%
D3 medium residues 63-138
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009330115__Hubei_sobemo-like_virus_28__1923214__D19-91
D4 medium residues 183-208_275-347
PDB
Domain cluster: rep: RdRp__YP_004940021__Chocolate_lily_virus_A__1120751__D251-280_349-443