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hypothetical_protein_2

Euk-Vir

Hubei_sobemo-like_virus_33

hypothetical_protein_2__YP_009330069__Hubei_sobemo-like_virus_33__1923220

Identity

Accession:: YP_009330069 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

92.9 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_33

TaxID: 1923220

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 318-376

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009330269__Hubei_tetragnatha_maxillosa_virus_6__1923248__D276-336

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1khvA05	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.79	69.0	5.92e-01	100.0%	82.5%
3nkyA03	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.75	65.0	6.09e-01	100.0%	82.2%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.67	49.0	3.83e-01	79.7%	89.1%
2chpA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.62	46.0	3.51e-01	81.4%	86.5%
6nmnA02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.62	47.0	3.76e-01	84.7%	58.6%
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.61	51.0	4.59e-01	98.3%	83.1%
5dajD00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.61	42.0	3.01e-01	74.6%	29.2%
1o5xA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.60	52.0	3.45e-01	98.3%	41.1%
3u4qB04	6.10.140.1030	Special › Helix non-globular › Helix Hairpins ›	0.59	48.0	4.63e-01	94.9%	95.7%
4n7bA03	3.40.1010.20	Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain	0.59	48.0	4.15e-01	93.2%	75.3%
1yozA00	1.10.3200.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like	0.59	48.0	4.06e-01	100.0%	86.7%
2uxuB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	44.0	3.16e-01	93.2%	63.4%
2h9aA02	3.40.50.11600	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	45.0	3.61e-01	100.0%	50.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3419863	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	52.0	3.45e-01	100.0%	49.3%
3197184	109.4.1.120 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2	0.60	48.0	3.26e-01	100.0%	23.3%
None	—		0.58	46.0	2.80e-01	94.9%	13.6%

D2 medium residues 1-22_143-217_239-317

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D3 medium residues 23-142_218-238

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	35.7	6.90e-09	64.5%	14.4%