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hypothetical_protein_2

Euk-Vir

Hubei_sobemo-like_virus_8

hypothetical_protein_2__YP_009330088__Hubei_sobemo-like_virus_8__1923241

Identity

Accession:
YP_009330088 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

91.4 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_8

TaxID: 1923241

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 285-345
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337273__Shuangao_insect_virus_9__1923470__D250-307
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 57.0 4.27e-01 77.0% 93.1%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 47.0 4.00e-01 75.4% 81.3%
4nuuB02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 46.0 3.66e-01 72.1% 78.9%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.66 47.0 3.26e-01 75.4% 55.5%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.60e-01 100.0% 56.9%
4he8D00 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.56 41.0 3.10e-01 80.3% 41.2%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 43.0 3.57e-01 96.7% 93.9%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 44.0 3.29e-01 98.4% 99.4%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 42.0 3.55e-01 96.7% 87.4%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 38.0 3.00e-01 75.4% 52.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016390 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 50.0 3.70e-01 90.2% 41.1%
3168285 109.4.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka 0.64 51.0 3.67e-01 96.7% 45.1%
3713510 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 47.0 2.95e-01 86.9% 26.4%
5047951 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.52e-01 91.8% 54.7%
3638575 109.3.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.57 50.0 3.32e-01 100.0% 49.0%
3217577 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.56 41.0 4.15e-01 82.0% 98.3%
D2 medium residues 1-106_143-203
PDB
Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02123.22 best RdRP_4 31.4 1.40e-07 47.3% 13.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 29.0 3.81e-01 96.4% 92.6%
1epuA04 3.40.50.1910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 2 0.51 36.0 3.58e-01 95.8% 69.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1279063 304.48.1.13 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 0.77 73.0 5.23e-01 100.0% 45.8%
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.77 73.0 5.45e-01 100.0% 51.7%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.76 73.0 5.45e-01 100.0% 48.8%
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.76 72.0 5.36e-01 100.0% 50.0%
None — 0.75 71.0 5.34e-01 100.0% 48.9%
2994348 304.48.1.9 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N 0.74 70.0 4.28e-01 100.0% 20.2%
217141 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.73 69.0 5.29e-01 100.0% 52.4%
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.72 68.0 5.03e-01 100.0% 47.7%
4218573 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.69 64.0 4.96e-01 100.0% 54.3%
3691350 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.69 64.0 5.38e-01 100.0% 73.3%
4361688 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.68 63.0 4.78e-01 100.0% 51.2%
3473558 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.67 57.0 5.08e-01 89.8% 77.0%
3479114 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 49.0 3.31e-01 99.4% 79.5%
3934732 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 22.0 3.34e-01 71.3% 100.0%
D3 medium residues 107-142_204-284
PDB
Domain cluster: rep: RdRp__YP_004940021__Chocolate_lily_virus_A__1120751__D251-280_349-443