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hypothetical_protein_2

Euk-Vir

Hubei_sobemo-like_virus_42

hypothetical_protein_2__YP_009330107__Hubei_sobemo-like_virus_42__1923230

Identity

Accession:
YP_009330107 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

91.3 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_42

TaxID: 1923230

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 307-377
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009330046__Hubei_sobemo-like_virus_16__1923201__D209-277
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkyA03 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.75 58.0 5.78e-01 88.7% 82.2%
2wviA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.73 56.0 4.22e-01 80.3% 43.8%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 52.0 4.90e-01 85.9% 77.3%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.66 53.0 4.35e-01 88.7% 58.3%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.66 48.0 3.94e-01 78.9% 88.2%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.65 49.0 4.09e-01 80.3% 50.4%
1w3bB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 50.0 3.21e-01 84.5% 17.1%
5dlqB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 49.0 3.09e-01 90.1% 23.6%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 41.0 3.33e-01 70.4% 57.7%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 48.0 4.33e-01 90.1% 89.5%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 45.0 3.72e-01 81.7% 94.2%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.57 46.0 3.92e-01 94.4% 90.1%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 39.0 3.36e-01 80.3% 78.6%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 41.0 3.00e-01 90.1% 80.1%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.04e-01 94.4% 89.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3661446 109.4.1.939 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_C 0.77 59.0 4.47e-01 81.7% 41.9%
None — 0.76 59.0 5.13e-01 83.1% 61.9%
4974234 604.12.1.141 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 8xMP 0.73 54.0 5.12e-01 78.9% 92.9%
3648156 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.73 62.0 4.09e-01 93.0% 34.4%
2507077 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 53.0 3.96e-01 77.5% 81.6%
3601160 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 58.0 4.67e-01 90.1% 59.3%
3450261 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.68 54.0 4.37e-01 87.3% 47.9%
3501795 548.1.1.2 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRAB 0.66 44.0 5.15e-01 81.7% 98.0%
3233736 3065.1.1.2 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 0.64 44.0 3.38e-01 70.4% 46.7%
4086555 109.4.1.1453 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_17 0.64 50.0 4.07e-01 84.5% 80.0%
None — 0.62 47.0 4.29e-01 84.5% 62.4%
3892460 548.1.1.1 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.61 42.0 4.48e-01 78.9% 85.0%
3610732 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 4.12e-01 88.7% 60.8%
4444405 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 3.86e-01 88.7% 53.9%
None — 0.57 41.0 4.22e-01 78.9% 83.8%
3286283 4266.2.1.1 ↗ alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 0.56 45.0 4.01e-01 88.7% 92.3%
3391469 109.4.1.934 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.56 45.0 4.09e-01 90.1% 81.0%
3905557 109.7.1.13 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › PF31234 0.54 40.0 3.98e-01 80.3% 77.3%
D2 medium residues 1-136_173-239
PDB
Domain cluster: rep: RdRp__YP_009342464__Wuhan_house_centipede_virus_5__1923709__D64-86_108-166_205-231_263-303
D3 medium residues 137-172_240-306
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181