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hypothetical_protein_2

Euk-Vir

Hubei_sobemo-like_virus_14

hypothetical_protein_2__YP_009330128__Hubei_sobemo-like_virus_14__1923199

Identity

Accession:: YP_009330128 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

90.1 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_14

TaxID: 1923199

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 203-263

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3renA00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.69	59.0	3.72e-01	98.4%	66.5%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.68	50.0	4.70e-01	80.3%	90.7%
8g0lB01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.67	52.0	3.24e-01	88.5%	27.4%
2yhcA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.66	55.0	3.89e-01	96.7%	48.3%
3lsjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.66	49.0	3.73e-01	82.0%	72.5%
1e2aA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.60	42.0	3.69e-01	77.0%	86.3%
3oxfA05	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	43.0	4.10e-01	82.0%	82.7%
7ar7E01	1.10.10.1590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E	0.54	42.0	4.20e-01	90.2%	98.4%
1q2lA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.54	44.0	3.11e-01	98.4%	79.7%
1dj8A00	1.10.890.10	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A	0.51	39.0	3.63e-01	85.2%	94.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3788560	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.74	64.0	3.64e-01	100.0%	12.9%
3812744	109.4.1.1256 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3	0.70	57.0	4.57e-01	90.2%	79.2%
3298705	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.67	56.0	3.38e-01	100.0%	14.2%
3906937	192.21.1.0 ↗	alpha bundles › Long alpha-hairpin › Slp2a Rab-binding domain-like › Slp2a Rab-binding domain-like	0.59	41.0	3.96e-01	73.8%	88.6%

D2 medium residues 1-24_59-122

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009342451__Wuhan_house_centipede_virus_4__1923708__D36-106

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kr7A02	2.40.10.330	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.56	25.0	3.05e-01	100.0%	61.4%
1ilvA00	3.40.1210.10	Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase	0.55	44.0	3.21e-01	87.5%	86.9%
2w00A02	3.90.640.50	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.54	30.0	3.30e-01	70.5%	65.8%
5a48B00	3.30.420.610	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like	0.52	35.0	3.45e-01	98.9%	64.6%
3mwmA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	32.0	3.37e-01	98.9%	72.0%
4lniJ01	3.10.20.70	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain	0.50	34.0	3.28e-01	70.5%	85.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3960654	239.4.1.2 ↗	beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › GSIII_N	0.55	32.0	3.07e-01	90.9%	45.7%
4946546	304.139.1.3 ↗	a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7	0.53	42.0	3.02e-01	88.6%	50.4%
3599873	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.53	41.0	3.07e-01	86.4%	58.0%
4948421	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	36.0	3.29e-01	70.5%	74.8%
4639306	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.52	38.0	2.24e-01	77.3%	20.1%
5061659	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	39.0	4.19e-01	88.6%	97.3%
4944834	3625.1.1.0 ↗	alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain	0.51	41.0	3.90e-01	92.0%	94.5%
5057127	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	35.0	2.56e-01	72.7%	42.4%

D3 medium residues 25-58_123-202

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181