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hypothetical_protein_2

Euk-Vir

Beihai_paphia_shell_virus_1

hypothetical_protein_2__YP_009333304__Beihai_paphia_shell_virus_1__1922496

Identity

Accession:
YP_009333304 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Beihai_paphia_shell_virus_1

TaxID: 1922496

Cluster

View cluster (173 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 138-308
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00073.27 best Rhv 21.4 2.40e-04 78.4% 60.2%
D2 high residues 438-635_662-679
PDB
Domain cluster: rep: putative_capsid_protein__YP_009407904__Lasius_neglectus_virus_1__2018501__D51-89_108-371
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00073.27 best Rhv 20.9 3.40e-04 38.0% 21.6%
D3 medium residues 354-437_680-706
PDB
D4 medium residues 707-753_776-853_879-895
PDB
D5 medium residues 754-775_854-878_896-921
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009336805__Wenzhou_channeled_applesnail_virus_1__1923557__D687-711_768-791_827-849
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.86 80.0 5.32e-01 100.0% 53.1%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.85 80.0 5.28e-01 100.0% 62.3%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.83 77.0 5.24e-01 100.0% 54.9%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.82 76.0 5.14e-01 100.0% 56.9%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.79 72.0 4.80e-01 100.0% 56.5%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.77 70.0 4.93e-01 100.0% 59.0%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.77 69.0 4.65e-01 100.0% 55.2%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 70.0 4.87e-01 100.0% 67.4%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 67.0 4.56e-01 100.0% 55.1%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 51.0 4.23e-01 94.5% 83.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 48.0 3.43e-01 90.4% 89.5%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.07e-01 89.0% 83.3%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.57 46.0 4.41e-01 87.7% 89.3%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 45.0 3.43e-01 87.7% 59.8%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.52e-01 89.0% 95.7%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.08e-01 90.4% 89.2%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 46.0 3.52e-01 91.8% 84.7%
2q3zA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.23e-01 93.2% 89.6%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 44.0 4.10e-01 91.8% 77.1%
1p2zA04 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.55 46.0 3.48e-01 100.0% 94.2%
4ydjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.67e-01 90.4% 78.5%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.71e-01 91.8% 80.0%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.79e-01 93.2% 94.4%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.54 45.0 3.92e-01 94.5% 83.8%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 4.28e-01 91.8% 91.3%
1y7eA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.53 42.0 3.69e-01 90.4% 99.2%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.91e-01 90.4% 81.6%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 42.0 3.21e-01 90.4% 93.4%
4bhuA00 2.60.40.3490 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.59e-01 93.2% 86.7%
3holA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 39.0 3.23e-01 84.9% 99.3%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.51 43.0 3.84e-01 95.9% 75.5%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.57e-01 97.3% 83.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 43.0 3.74e-01 97.3% 81.7%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.66e-01 90.4% 75.7%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.98e-01 90.4% 88.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.50 42.0 3.66e-01 95.9% 73.3%
2dliA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.69e-01 87.7% 79.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048083 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.62 54.0 3.96e-01 100.0% 81.0%
3235066 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 49.0 4.09e-01 97.3% 97.0%
3991167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.47e-01 76.7% 95.4%
4970186 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.57 46.0 3.96e-01 93.2% 88.5%
4278307 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.57 47.0 3.49e-01 91.8% 78.4%
4968972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.01e-01 93.2% 95.8%
3680066 10.10.1.5 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 0.56 44.0 3.58e-01 90.4% 55.5%
5047228 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 3.32e-01 91.8% 98.1%
3595506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.90e-01 91.8% 94.2%
4888734 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.55 44.0 3.69e-01 87.7% 76.2%
5041088 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.55 46.0 4.13e-01 95.9% 84.8%
3415432 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 3.27e-01 78.1% 99.3%
4332271 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.54 45.0 3.82e-01 93.2% 78.9%
3816212 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 44.0 3.28e-01 95.9% 64.2%
3259566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.85e-01 89.0% 87.6%
4427418 11.1.1.1229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 0.53 42.0 3.90e-01 89.0% 89.5%
5013669 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 4.21e-01 93.2% 97.6%
1117770 11.29.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › PUD homologs › PUD homologs › PUD1_2 0.52 42.0 3.48e-01 93.2% 78.3%
4016932 10.32.1.52 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.52 42.0 3.12e-01 91.8% 76.1%
3194124 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 39.0 2.79e-01 82.2% 56.0%
3297865 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 41.0 3.51e-01 89.0% 96.8%
3800901 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 42.0 3.77e-01 90.4% 72.4%
4959438 11.4.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.51 40.0 3.41e-01 90.4% 83.0%
3211893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.84e-01 89.0% 82.1%
5035692 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.52e-01 90.4% 70.4%
3223735 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.51 42.0 3.63e-01 93.2% 96.7%
3254455 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.51 43.0 3.35e-01 94.5% 69.1%
3783481 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.51 41.0 3.58e-01 91.8% 85.8%
3736368 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 42.0 3.16e-01 94.5% 77.9%
3776609 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.45e-01 89.0% 62.4%
5030467 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.58e-01 90.4% 85.5%
3256943 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.86e-01 93.2% 92.6%
5039235 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 40.0 3.55e-01 89.0% 92.7%
3258282 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.63e-01 86.3% 86.3%
4027865 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 36.0 3.07e-01 78.1% 99.2%