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hypothetical_protein_2

Euk-Vir

Beihai_mollusks_virus_2

hypothetical_protein_2__YP_009333308__Beihai_mollusks_virus_2__1922435

Identity

Accession:
YP_009333308 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

73.3 mean pLDDT

Taxonomy

Beihai_mollusks_virus_2

TaxID: 1922435

Cluster

View cluster (173 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 92-283
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00073.27 best Rhv 31.1 2.50e-07 71.4% 52.0%
D2 high residues 421-611_641-653
PDB
Domain cluster: rep: putative_capsid_protein__YP_009407904__Lasius_neglectus_virus_1__2018501__D51-89_108-371
D3 medium residues 681-708_758-810_845-892
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009333500__Beihai_picorna-like_virus_80__1922628__D367-444_472-493_520-589
D4 medium residues 709-757_811-844
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009333569__Beihai_picorna-like_virus_28__1922571__D623-660_730-764
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.89 84.0 5.92e-01 100.0% 61.9%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.81 62.0 4.24e-01 79.5% 45.4%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 54.0 3.95e-01 74.7% 43.1%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 53.0 3.89e-01 79.5% 43.3%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 63.0 4.75e-01 100.0% 66.1%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 51.0 3.53e-01 79.5% 43.7%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 3.51e-01 79.5% 44.2%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 56.0 4.07e-01 92.8% 55.3%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 58.0 4.05e-01 97.6% 43.1%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 4.10e-01 100.0% 47.3%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.77e-01 92.8% 51.9%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.27e-01 100.0% 28.4%
1a6cA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.19e-01 100.0% 61.8%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.51 36.0 2.75e-01 74.7% 60.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4835076 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.89 84.0 6.21e-01 100.0% 72.9%
2440134 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.65 56.0 4.25e-01 92.8% 54.8%
143449 10.2.1.34 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat 0.55 49.0 3.86e-01 100.0% 54.8%
1291942 4065.1.1.2 ↗ a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_N 0.54 43.0 2.69e-01 86.7% 76.5%
1215 10.2.1.34 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat 0.54 48.0 3.82e-01 100.0% 53.5%