←Back to structures

hypothetical_protein_2

Euk-Vir

Beihai_shrimp_virus_4

hypothetical_protein_2__YP_009333455__Beihai_shrimp_virus_4__1922670

Identity

Accession:: YP_009333455 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

73.0 mean pLDDT

Taxonomy

Beihai_shrimp_virus_4

TaxID: 1922670

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 107-120_225-257_277-325_343-390

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.64	45.0	4.21e-01	72.2%	86.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.80	75.0	5.47e-01	100.0%	73.4%

D2 medium residues 121-190

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009330115__Hubei_sobemo-like_virus_28__1923214__D19-91

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2cufA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.56	40.0	4.02e-01	100.0%	75.0%
4esbA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	44.0	3.91e-01	88.6%	80.6%
1x2nA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.55	35.0	3.73e-01	100.0%	75.0%
1gcvB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	43.0	3.50e-01	100.0%	45.6%
1br2A03	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.51	46.0	4.13e-01	100.0%	85.3%
2anvA00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.50	41.0	3.38e-01	97.1%	50.0%
3s5wA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.50	44.0	2.77e-01	100.0%	99.5%
1nnjA01	3.20.190.10	Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal	0.50	39.0	3.36e-01	92.9%	83.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3696947	3967.1.1.0 ↗	extended segments › Mitoribosomal protein mS26 › Mitoribosomal protein mS26 › Mitoribosomal protein mS26	0.57	36.0	2.56e-01	87.1%	22.5%
3720297	222.1.1.20 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N	0.55	39.0	3.09e-01	98.6%	33.1%
3398568	103.1.1.35 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF4778	0.52	39.0	3.67e-01	88.6%	80.4%

D3 medium residues 191-224_326-342

PDB

Domain cluster: representative

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4120365	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.53	45.0	3.69e-01	100.0%	77.0%
4145938	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.52	43.0	3.52e-01	96.1%	76.0%
4065495	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.51	44.0	3.59e-01	100.0%	77.0%
4433128	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.51	43.0	3.62e-01	100.0%	81.1%
5014626	304.111.1.1 ↗	a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C	0.50	38.0	2.82e-01	94.1%	49.4%

D4 medium residues 432-493

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vxxA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.83	60.0	4.27e-01	75.8%	77.9%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.80	58.0	4.41e-01	75.8%	90.6%
3t9jA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.79	57.0	4.26e-01	75.8%	92.4%
3pubA01	1.10.10.2400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	0.77	56.0	5.23e-01	75.8%	68.9%
2gs4A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.77	55.0	4.06e-01	75.8%	88.0%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.76	54.0	4.71e-01	74.2%	87.9%
6whbA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.72	60.0	3.93e-01	93.5%	32.5%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.66	45.0	4.33e-01	74.2%	80.5%
3ejnA03	1.20.120.840	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain	0.64	47.0	4.01e-01	82.3%	92.8%
3hd5B01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.59	40.0	2.94e-01	71.0%	77.9%
4acoA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.57	45.0	3.86e-01	91.9%	92.7%
3ss3C02	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.57	44.0	2.90e-01	88.7%	31.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4676	192.9.1.1 ↗	alpha bundles › Long alpha-hairpin › Sporulation inhibitor Sda › Sporulation inhibitor Sda › Sda	0.75	52.0	5.83e-01	72.6%	95.7%
4426255	109.4.1.890 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C	0.74	60.0	4.87e-01	91.9%	61.7%
3390261	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.69	48.0	4.24e-01	72.6%	77.8%
3490732	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	54.0	3.65e-01	90.3%	43.6%
3807750	186.2.1.1 ↗	alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box	0.67	55.0	4.41e-01	91.9%	74.4%
4307436	109.2.1.7 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth	0.66	57.0	3.98e-01	100.0%	76.7%
3788338	604.12.1.9 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2	0.66	46.0	4.36e-01	74.2%	93.2%
4943818	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.64	53.0	3.75e-01	100.0%	55.1%
3961	150.1.1.7 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF892	0.60	42.0	3.20e-01	75.8%	86.9%
5002758	4030.1.1.0 ↗	alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz	0.60	42.0	4.27e-01	75.8%	100.0%
4974476	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.57	47.0	2.76e-01	100.0%	33.2%
3602305	2004.1.1.417 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21	0.55	47.0	3.18e-01	100.0%	35.3%