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hypothetical_protein_2

Euk-Vir

Hubei_tombus-like_virus_9

hypothetical_protein_2__YP_009336563__Hubei_tombus-like_virus_9__1923296

Identity

Accession:
YP_009336563 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

69.3 mean pLDDT

Taxonomy

Hubei_tombus-like_virus_9

TaxID: 1923296

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-279
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337275__Changjiang_tombus-like_virus_14__1922807__D50-279
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.79 75.0 6.94e-01 100.0% 95.5%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 74.0 6.83e-01 100.0% 96.5%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 74.0 7.10e-01 100.0% 94.0%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 28.0 3.53e-01 73.4% 52.4%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 51.0 6.17e-01 78.2% 100.0%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 51.0 4.83e-01 78.2% 58.7%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 49.0 6.00e-01 78.6% 99.4%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 50.0 5.80e-01 78.2% 91.3%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 50.0 5.66e-01 79.8% 88.4%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 52.0 6.14e-01 83.5% 100.0%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 53.0 5.80e-01 83.5% 87.0%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 28.0 4.81e-01 81.9% 100.0%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.73 31.0 4.76e-01 73.4% 96.1%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.72 33.0 4.66e-01 80.6% 88.9%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 28.0 3.89e-01 73.4% 70.2%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.71 43.0 5.39e-01 85.1% 98.0%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 46.0 5.54e-01 83.5% 97.5%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 50.0 5.76e-01 84.7% 96.7%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 20.0 3.96e-01 70.6% 92.4%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.70 34.0 4.95e-01 81.0% 100.0%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 5.48e-01 79.0% 86.8%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 48.0 5.14e-01 81.0% 80.0%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 49.0 5.73e-01 76.2% 100.0%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 51.0 5.45e-01 78.6% 86.7%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.68 32.0 4.75e-01 83.1% 100.0%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 49.0 5.14e-01 81.0% 80.5%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 5.13e-01 82.3% 81.1%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 26.0 3.68e-01 81.9% 71.3%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 48.0 5.55e-01 77.8% 98.9%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 47.0 4.68e-01 77.8% 69.0%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 27.0 3.36e-01 74.2% 56.6%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.54e-01 85.1% 98.5%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 4.76e-01 82.3% 78.3%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 31.0 4.35e-01 81.9% 93.2%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.65 48.0 5.41e-01 79.4% 98.4%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.88e-01 81.0% 79.6%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 4.88e-01 78.2% 80.4%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 4.83e-01 81.9% 79.6%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 50.0 4.85e-01 82.7% 78.3%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 4.91e-01 85.9% 85.0%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 4.69e-01 82.3% 71.6%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.20e-01 84.7% 93.1%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.61 44.0 4.97e-01 88.3% 94.2%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 4.45e-01 77.8% 70.1%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 35.0 4.49e-01 79.4% 96.5%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 4.94e-01 85.1% 90.6%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 33.0 4.40e-01 77.8% 99.2%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 4.77e-01 79.0% 95.6%
2w1sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 30.0 3.86e-01 73.0% 85.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 4.30e-01 81.5% 71.8%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.26e-01 82.7% 71.4%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 29.0 4.05e-01 94.8% 98.4%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 32.0 4.22e-01 79.0% 100.0%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 35.0 4.29e-01 85.5% 98.1%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 24.0 3.54e-01 94.4% 99.0%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.39e-01 87.9% 89.2%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 23.0 3.56e-01 80.6% 100.0%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 31.0 3.64e-01 83.1% 83.8%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 34.0 4.00e-01 83.5% 93.1%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 31.0 3.94e-01 94.8% 100.0%
4fo9A01 2.60.120.780 Mainly Beta › Sandwich › Jelly Rolls › PINIT domain 0.51 30.0 3.81e-01 89.5% 97.9%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 4.03e-01 83.9% 93.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 32.0 3.99e-01 80.6% 100.0%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 4.11e-01 92.3% 100.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883090 10.2.1.20 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Birna_VP2 0.80 76.0 6.20e-01 100.0% 94.6%
2099165 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.78 74.0 6.48e-01 100.0% 84.5%
1114663 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.78 74.0 6.63e-01 100.0% 90.9%
3022795 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.77 73.0 5.85e-01 100.0% 82.7%
1693524 10.2.1.49 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN 0.75 49.0 5.68e-01 78.2% 89.0%
1693522 10.2.1.49 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN 0.74 50.0 5.78e-01 78.2% 90.8%
328688 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.74 53.0 5.80e-01 83.5% 87.0%
4941447 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.74 35.0 5.10e-01 73.0% 100.0%
5053826 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 34.0 5.05e-01 75.8% 100.0%
3289166 10.20.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.72 28.0 4.03e-01 77.8% 74.2%
5034162 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.72 28.0 4.47e-01 77.0% 90.0%
3437261 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.72 35.0 5.04e-01 74.2% 100.0%
3783891 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.71 31.0 4.47e-01 72.6% 86.1%
5047633 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.71 32.0 4.84e-01 79.0% 100.0%
3532030 10.32.1.222 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ATRN 0.71 34.0 4.17e-01 72.6% 69.1%
5044901 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 33.0 4.69e-01 81.0% 93.9%
3415539 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.69 31.0 4.64e-01 73.4% 95.5%
1234 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.69 51.0 5.80e-01 78.2% 97.9%
1877512 10.2.1.32 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Astro_capsid_N 0.67 49.0 5.62e-01 78.2% 99.5%
5083101 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 34.0 4.81e-01 78.6% 100.0%
3199160 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 31.0 4.58e-01 75.4% 100.0%
3344591 10.2.1.81 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.67 45.0 4.97e-01 88.7% 81.5%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 31.0 4.61e-01 73.8% 100.0%
4971064 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 31.0 4.55e-01 72.2% 100.0%
1211 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.67 47.0 4.68e-01 77.8% 69.0%
4980801 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 30.0 4.56e-01 73.8% 100.0%
5049074 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.66 29.0 3.93e-01 77.8% 76.9%
3605104 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.65 36.0 4.71e-01 81.0% 95.0%
5039047 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 32.0 4.56e-01 79.0% 100.0%
5039365 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 34.0 4.45e-01 81.9% 90.4%
5020593 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 32.0 3.86e-01 84.3% 69.7%
1213 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.64 49.0 4.88e-01 78.2% 80.4%
4966023 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.63 33.0 4.55e-01 74.2% 100.0%
5042811 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 33.0 4.44e-01 85.5% 100.0%
3254899 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.63 35.0 4.50e-01 80.2% 92.4%
3249250 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.61 26.0 4.04e-01 76.2% 100.0%
3637401 4081.1.1.8 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.61 31.0 3.34e-01 83.5% 54.1%
5042255 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 34.0 4.49e-01 79.4% 100.0%
5035793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 20.0 3.47e-01 78.2% 98.6%
2526957 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.58 44.0 4.24e-01 82.3% 68.1%
1043486 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 43.0 4.15e-01 77.8% 69.1%
3405712 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.57 35.0 4.41e-01 73.8% 100.0%
3705883 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 34.0 4.14e-01 74.2% 90.6%
3477632 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 33.0 4.02e-01 74.2% 88.1%
3998612 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 32.0 3.73e-01 95.6% 79.4%
3249790 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 29.0 3.08e-01 83.5% 53.0%
5039473 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 28.0 3.80e-01 83.1% 100.0%
3719077 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 38.0 4.14e-01 89.9% 86.5%
3728710 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 35.0 4.14e-01 83.5% 98.2%
4021474 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 33.0 4.06e-01 74.2% 100.0%
4960572 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 33.0 4.00e-01 96.0% 97.0%
1150 10.32.1.36 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM27 0.51 35.0 4.11e-01 92.3% 100.0%
5010079 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 26.0 3.59e-01 73.4% 100.0%
3608816 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 37.0 3.99e-01 89.1% 86.5%
3236880 10.32.1.42 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PINIT 0.50 30.0 3.74e-01 81.0% 94.2%