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hypothetical_protein_2

Euk-Vir

Shahe_sobemo-like_virus_1

hypothetical_protein_2__YP_009336602__Shahe_sobemo-like_virus_1__1923454

Identity

Accession:: YP_009336602 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

86.0 mean pLDDT

Taxonomy

Shahe_sobemo-like_virus_1

TaxID: 1923454

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 376-441

PDB

Domain cluster: representative

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7ewfA01	1.25.40.990	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.76	62.0	4.16e-01	89.4%	29.1%
3cqcB01	1.20.58.1380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.74	56.0	5.07e-01	81.8%	66.7%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.74	55.0	5.30e-01	80.3%	89.3%
2i2oA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.73	59.0	4.20e-01	90.9%	39.8%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.73	55.0	4.66e-01	80.3%	80.6%
3vwaA03	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.73	59.0	3.87e-01	90.9%	26.5%
4jgiA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.71	49.0	4.67e-01	72.7%	83.7%
3zheD01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.71	62.0	4.39e-01	100.0%	54.6%
3l9fA02	6.10.140.1570	Special › Helix non-globular › Helix Hairpins ›	0.70	52.0	4.86e-01	78.8%	97.5%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.68	52.0	4.82e-01	84.8%	88.6%
2lsgA00	1.20.58.1280	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain	0.67	55.0	4.89e-01	92.4%	84.5%
1z21A00	1.10.10.1000	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain	0.66	49.0	4.33e-01	78.8%	67.7%
1juqC00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.66	56.0	4.33e-01	95.5%	64.4%
3m3mA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.64	50.0	4.29e-01	89.4%	85.3%
1x46A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.64	52.0	3.99e-01	89.4%	58.0%
3k17A02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.63	47.0	3.75e-01	81.8%	59.3%
2qvaA01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.62	51.0	4.21e-01	95.5%	72.1%
8befJ01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.59	43.0	3.13e-01	77.3%	48.8%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.57	38.0	3.57e-01	71.2%	75.0%
3s63A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.57	40.0	3.69e-01	75.8%	56.8%
1i5eA00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	47.0	3.37e-01	98.5%	50.5%
2q00B00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.54	40.0	3.43e-01	83.3%	71.3%
3cueB00	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.53	42.0	3.22e-01	90.9%	77.2%
2d6yA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	43.0	3.18e-01	95.5%	59.1%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3989216	109.4.1.275 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C	0.81	73.0	5.00e-01	100.0%	53.2%
3605049	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.77	71.0	3.86e-01	100.0%	9.6%
3617171	109.4.1.271 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR	0.76	63.0	4.69e-01	90.9%	44.2%
None	—		0.76	61.0	4.23e-01	89.4%	84.0%
3783259	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.72	58.0	4.99e-01	90.9%	62.7%
3929749	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.72	62.0	4.56e-01	95.5%	43.4%
4027059	601.13.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS	0.72	54.0	4.21e-01	81.8%	51.7%
3998931	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.71	55.0	4.70e-01	83.3%	79.0%
3517181	109.4.1.1286 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12	0.71	59.0	4.61e-01	93.9%	52.4%
4974234	604.12.1.141 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 8xMP	0.70	52.0	4.89e-01	83.3%	87.1%
3446916	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.70	57.0	4.06e-01	92.4%	50.7%
3585163	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.70	53.0	4.60e-01	83.3%	78.1%
3620341	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.69	56.0	4.91e-01	92.4%	72.4%
3167251	109.4.1.177 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3	0.69	58.0	3.21e-01	95.5%	18.1%
4394736	109.4.1.317 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5	0.68	57.0	4.49e-01	93.9%	55.2%
3575524	109.4.1.777 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	56.0	3.62e-01	93.9%	23.0%
4288489	4973.1.1.2 ↗	alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaG_cat_HB	0.67	56.0	5.42e-01	95.5%	98.7%
3565142	627.1.1.0 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain	0.62	47.0	3.81e-01	84.8%	99.3%
3362789	4133.1.1.2 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110	0.62	52.0	4.68e-01	100.0%	86.0%
3481965	603.1.1.17 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE	0.61	50.0	3.68e-01	89.4%	61.8%
3684086	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.60	47.0	3.39e-01	89.4%	36.7%
5039745	2003.1.1.36 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N	0.52	45.0	3.18e-01	100.0%	95.1%

D2 medium residues 29-54_181-214_292-375

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gx5A03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.86	61.0	6.66e-01	72.9%	100.0%
5jxsA02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.84	67.0	6.75e-01	81.9%	98.6%
3h5xA03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.79	57.0	6.39e-01	74.3%	100.0%
2r7rA04	3.30.70.2480	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.73	56.0	5.44e-01	79.2%	79.6%
1hi8A03	3.30.70.1600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.70	58.0	5.39e-01	86.1%	90.3%
3tviA02	3.30.2130.10	Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like	0.61	43.0	4.22e-01	72.2%	89.9%
3tvkA00	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.61	47.0	4.43e-01	80.6%	82.6%
3aawA02	3.30.2130.10	Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like	0.58	41.0	3.95e-01	72.2%	87.3%
7e6gA01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.58	44.0	4.39e-01	79.2%	89.3%
2jgbA01	3.30.760.10	Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e	0.57	49.0	4.68e-01	94.4%	98.8%
3q23A02	3.30.70.2440	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	41.0	4.11e-01	75.0%	91.3%
1vk3A01	3.90.650.10	Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain	0.56	41.0	3.79e-01	75.0%	87.2%
5vk4A02	3.90.650.10	Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain	0.52	40.0	3.79e-01	80.6%	99.4%
1mg7A01	3.30.70.1000	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like	0.51	43.0	4.02e-01	88.9%	92.0%
3mcqA02	3.90.650.10	Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain	0.51	39.0	3.74e-01	80.6%	100.0%
1zj8A02	3.90.480.10	Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › Sulfite Reductase Hemoprotein;Domain 2	0.51	38.0	3.76e-01	77.8%	86.8%
5uaoC00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	42.0	2.92e-01	91.0%	49.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3483524	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.70	57.0	4.40e-01	85.4%	62.3%
3937215	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	57.0	4.15e-01	92.4%	86.6%
5075587	304.8.1.10 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7	0.57	32.0	4.04e-01	81.2%	97.5%
4929225	304.8.1.10 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7	0.53	37.0	3.73e-01	72.9%	90.0%
2721343	304.6.1.3 ↗	a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE	0.51	38.0	3.20e-01	79.2%	80.2%

D3 medium residues 55-128

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009330115__Hubei_sobemo-like_virus_28__1923214__D19-91

D4 medium residues 129-180_215-291

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181